myRT

myRT report for GCA_001180465.1_E2_London_17_VIM_2_02_09

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Seq: CVUZ01000066.1 Pseudomonas aeruginosa genome assembly E2_London_17_VIM_2_02_09, contig E2_London_17_VIM_2_02_09_contig66, whole genome shotgun sequence (89189 bp)
Overview 1 RT 1: 40829-46513 bp Neighborhood of RT #1 [40829, 46518] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40829-41281 bp Feature: gene Location: 41265-41519 bp Ori: CRO10019.1 Gene: cptB Feature: domain Description: SdhE Location: 41271-41511 bp Feature: domain Description: SdhE Location: 41 271 -41 51 1 bp Feature: gene Location: 41595-42914 bp Ori: CRO10052.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41598-42174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 598-421 74 bp Feature: domain Description: YkfC Location: 42372-42528 bp Feature: domain Description: YkfC Location: 42372-42528 bp Feature: domain Description: HNH Note: nucleases Location: 42711-42849 bp Feature: domain Description: HNH Note: nucleases Location: 4271 1 -42849 bp Feature: gene Location: 44637-45581 bp Ori: CRO10080.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 44646-45546 bp Feature: domain Description: YgfZ Location: 44646-45546 bp Feature: gene Location: 45682-46518 bp Ori: CRO10114.1 Feature: domain Description: HDOD Location: 45685-46513 bp Feature: domain Description: HDOD Location: 45685-4651 3 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CVUZ01000047.1 Pseudomonas aeruginosa genome assembly E2_London_17_VIM_2_02_09, contig E2_London_17_VIM_2_02_09_contig47, whole genome shotgun sequence (14658 bp)
Overview 1 RT 1: 520-6160 bp Neighborhood of RT #1 [520, 6357] DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 520-1161 bp Ori: CRN99175.1 Feature: domain Description: DUF772 Location: 670-865 bp Feature: domain Description: DUF772 Location: 670-865 bp Feature: gene Location: 1550-2818 bp Ori: CRN99201.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1763-2420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1763-2 42 0 bp Feature: domain Description: GIIM Note: maturase Location: 2498-2720 bp Feature: domain Description: GIIM Note: maturase Location: 2 498-2 72 0 bp Feature: gene Location: 3550-3729 bp Feature: gene Location: 4813-6357 bp Ori: CRN99255.1 Feature: domain Description: CHD Location: 5029-5443 bp Feature: domain Description: CHD Location: 502 9-5443 bp Feature: domain Description: CHD Location: 5671-6160 bp Feature: domain Description: CHD Location: 5671-6160 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CVUZ01000222.1 Pseudomonas aeruginosa genome assembly E2_London_17_VIM_2_02_09, contig E2_London_17_VIM_2_02_09_contig222, whole genome shotgun sequence (190783 bp)
Overview 1 RT 1: 106099-116404 bp 2 RT 2: 132662-140826 bp Neighborhood of RT #1 [106099, 116406] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [132662, 140840] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 106099-107220 bp Ori: CRO78361.1 Feature: domain Description: COG3177 Location: 106117-107209 bp Feature: domain Description: COG3 177 Location: 106117-107209 bp Feature: gene Location: 107479-107640 bp Feature: gene Location: 107943-109628 bp Ori: CRO78424.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 108000-108240 bp Feature: domain Description: RVT_N Location: 108000-108240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108288-108924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108288-108924 bp Feature: domain Description: GIIM Note: maturase Location: 108978-109209 bp Feature: domain Description: GIIM Note: maturase Location: 108978-109209 bp Feature: domain Description: HNH Note: nucleases Location: 109461-109599 bp Feature: domain Description: HNH Note: nucleases Location: 109461-109599 bp Feature: gene Location: 110709-114446 bp Ori: CRO78459.1 Gene: cph2_7 Feature: domain Description: PBP2_BvgS_HisK_like Location: 110817-111474 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 110817-111474 bp Feature: domain Description: PRK09776 Location: 111687-112158 bp Feature: domain Description: PRK09776 Location: 111687-112158 bp Feature: domain Description: PAS Location: 112215-112740 bp Feature: domain Description: PAS Location: 112215-112740 bp Feature: domain Description: PRK10060 Location: 112752-114396 bp Feature: domain Description: PRK10060 Location: 112752-1143 96 bp Feature: gene Location: 114553-116406 bp Ori: CRO78489.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 114565-116404 bp Feature: domain Description: PRK05658 Location: 114565-116404 bp Feature: gene Location: 132662-133954 bp Ori: CRO79067.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 132752-133946 bp Feature: domain Description: PRK10770 Location: 13 2752-13 3 946 bp Feature: gene Location: 133935-136706 bp Ori: CRO79100.1 Gene: lptD Feature: domain Description: LptD Location: 134130-136692 bp Feature: domain Description: LptD Location: 13 413 0-13 6692 bp Feature: gene Location: 136839-138149 bp Ori: CRO79129.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136842-137418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 6842-13 7418 bp Feature: domain Description: YkfC Location: 137628-137781 bp Feature: domain Description: YkfC Location: 13 7628-13 7781 bp Feature: domain Description: HNH Note: nucleases Location: 137955-138093 bp Feature: domain Description: HNH Note: nucleases Location: 13 7955-13 8093 bp Feature: gene Location: 139393-139527 bp Feature: gene Location: 139824-140840 bp Ori: CRO79181.1 Feature: domain Description: COG3178 Location: 139827-140826 bp Feature: domain Description: COG3 178 Location: 13 9827-140826 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CVUZ01000028.1 Pseudomonas aeruginosa genome assembly E2_London_17_VIM_2_02_09, contig E2_London_17_VIM_2_02_09_contig28, whole genome shotgun sequence (18235 bp)
Overview 1 RT 1: 1803-9114 bp Neighborhood of RT #1 [1803, 10169] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1803-2942 bp Ori: CRN86248.1 Gene: recF_1 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 1875-194 4 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_21 Location: 24 18-274 8 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRN86287.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4 4 62 bp Feature: gene Location: 7431-8294 bp Ori: CRN86318.1 Feature: domain Description: YeeA Location: 7455-8160 bp Feature: domain Description: YeeA Location: 74 55-8160 bp Feature: gene Location: 8298-10169 bp Ori: CRN86338.1 Feature: domain Description: DUF262 Location: 8346-9114 bp Feature: domain Description: DUF262 Location: 834 6-9114 bp Sorry, your browser does not support inline SVG.
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