myRT

myRT report for GCA_001180485.1_E3_London_17_VIM_2_03_09

Download annotations/find similar RTs

Seq: CVVB01000221.1 Pseudomonas aeruginosa genome assembly E3_London_17_VIM_2_03_09, contig E3_London_17_VIM_2_03_09_contig234, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 1803-9114 bp Neighborhood of RT #1 [1803, 10169] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1803-2942 bp Ori: CRQ28013.1 Gene: recF_3 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 1 875-1 944 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_21 Location: 241 8-2748 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRQ28044.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991 -4462 bp Feature: gene Location: 7431-8294 bp Ori: CRQ28092.1 Feature: domain Description: YeeA Location: 7455-8160 bp Feature: domain Description: YeeA Location: 7455-81 60 bp Feature: gene Location: 8298-10169 bp Ori: CRQ28106.1 Feature: domain Description: DUF262 Location: 8346-9114 bp Feature: domain Description: DUF262 Location: 8346-91 1 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: CVVB01000099.1 Pseudomonas aeruginosa genome assembly E3_London_17_VIM_2_03_09, contig E3_London_17_VIM_2_03_09_contig99, whole genome shotgun sequence (104114 bp)
Overview 1 RT 1: 19430-29735 bp 2 RT 2: 45993-54157 bp Neighborhood of RT #1 [19430, 29737] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [45993, 54171] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 19430-20551 bp Ori: CRO35780.1 Feature: domain Description: COG3177 Location: 19448-20540 bp Feature: domain Description: COG3177 Location: 19448-2 0540 bp Feature: gene Location: 20810-20971 bp Feature: gene Location: 21274-22959 bp Ori: CRO35912.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 21331-21571 bp Feature: domain Description: RVT_N Location: 2 1331-2 1571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21619-22255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1619-2 2 2 55 bp Feature: domain Description: GIIM Note: maturase Location: 22309-22540 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 309-2 2 540 bp Feature: domain Description: HNH Note: nucleases Location: 22792-22930 bp Feature: domain Description: HNH Note: nucleases Location: 2 2 792 -2 2 930 bp Feature: gene Location: 24040-27777 bp Ori: CRO35944.1 Gene: cph2_5 Feature: domain Description: PBP2_BvgS_HisK_like Location: 24148-24805 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 4148-2 4805 bp Feature: domain Description: PRK09776 Location: 25018-25489 bp Feature: domain Description: PRK09776 Location: 2 5018-2 5489 bp Feature: domain Description: PAS Location: 25546-26071 bp Feature: domain Description: PAS Location: 2 5546-2 6071 bp Feature: domain Description: PRK10060 Location: 26083-27727 bp Feature: domain Description: PRK10060 Location: 2 6083-2 772 7 bp Feature: gene Location: 27884-29737 bp Ori: CRO35986.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 27896-29735 bp Feature: domain Description: PRK05658 Location: 2 7896-2 9735 bp Feature: gene Location: 45993-47285 bp Ori: CRO36923.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 46083-47277 bp Feature: domain Description: PRK10770 Location: 46083-472 77 bp Feature: gene Location: 47266-50037 bp Ori: CRO36955.1 Gene: lptD Feature: domain Description: LptD Location: 47461-50023 bp Feature: domain Description: LptD Location: 47461-5002 3 bp Feature: gene Location: 50170-51480 bp Ori: CRO36985.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50173-50749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50173-50749 bp Feature: domain Description: YkfC Location: 50959-51112 bp Feature: domain Description: YkfC Location: 50959-51112 bp Feature: domain Description: HNH Note: nucleases Location: 51286-51424 bp Feature: domain Description: HNH Note: nucleases Location: 512 86-5142 4 bp Feature: gene Location: 52724-52858 bp Feature: gene Location: 53155-54171 bp Ori: CRO37101.1 Feature: domain Description: COG3178 Location: 53158-54157 bp Feature: domain Description: COG3178 Location: 53158-54157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVVB01000166.1 Pseudomonas aeruginosa genome assembly E3_London_17_VIM_2_03_09, contig E3_London_17_VIM_2_03_09_contig166, whole genome shotgun sequence (88369 bp)
Overview 1 RT 1: 40834-46518 bp Neighborhood of RT #1 [40834, 46523] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40834-41286 bp Feature: gene Location: 41270-41524 bp Ori: CRO81667.1 Gene: cptB Feature: domain Description: SdhE Location: 41276-41516 bp Feature: domain Description: SdhE Location: 41276-41516 bp Feature: gene Location: 41600-42919 bp Ori: CRO81702.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41603-42179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41603 -42179 bp Feature: domain Description: YkfC Location: 42377-42533 bp Feature: domain Description: YkfC Location: 423 77-4253 3 bp Feature: domain Description: HNH Note: nucleases Location: 42716-42854 bp Feature: domain Description: HNH Note: nucleases Location: 42716-42854 bp Feature: gene Location: 44642-45586 bp Ori: CRO81780.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 44651-45551 bp Feature: domain Description: YgfZ Location: 44651-45551 bp Feature: gene Location: 45687-46523 bp Ori: CRO81810.1 Feature: domain Description: HDOD Location: 45690-46518 bp Feature: domain Description: HDOD Location: 45690-46518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CVVB01000206.1 Pseudomonas aeruginosa genome assembly E3_London_17_VIM_2_03_09, contig E3_London_17_VIM_2_03_09_contig219, whole genome shotgun sequence (43896 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRQ07931.1 Gene: glnQ_3 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4 590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRQ07951.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRQ07978.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRQ08019.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)