myRT

myRT report for GCA_001180545.1_P7_London_17_VIM_2_06_09

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Seq: CVXP01000253.1 Pseudomonas aeruginosa genome assembly P7_London_17_VIM_2_06_09, contig P7_London_17_VIM_2_06_09_contig269, whole genome shotgun sequence (36026 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRS64384.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRS64391.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-2841 4 bp Feature: gene Location: 29463-32483 bp Ori: CRS64397.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRS64408.1 Gene: recF_3 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 331 09-331 78 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVXP01000230.1 Pseudomonas aeruginosa genome assembly P7_London_17_VIM_2_06_09, contig P7_London_17_VIM_2_06_09_contig246, whole genome shotgun sequence (43889 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRS61811.1 Gene: glnQ_4 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRS61812.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRS61813.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRS61815.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 102 39-10653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVXP01000055.1 Pseudomonas aeruginosa genome assembly P7_London_17_VIM_2_06_09, contig P7_London_17_VIM_2_06_09_contig55, whole genome shotgun sequence (104153 bp)
Overview 1 RT 1: 19443-29748 bp 2 RT 2: 46006-54170 bp Neighborhood of RT #1 [19443, 29750] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [46006, 54184] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 19443-20564 bp Ori: CRS55457.1 Feature: domain Description: COG3177 Location: 19461-20553 bp Feature: domain Description: COG3 177 Location: 19461-20553 bp Feature: gene Location: 20823-20984 bp Feature: gene Location: 21287-22972 bp Ori: CRS55483.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 21344-21584 bp Feature: domain Description: RVT_N Location: 213 44-21584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21632-22268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2163 2-22268 bp Feature: domain Description: GIIM Note: maturase Location: 22322-22553 bp Feature: domain Description: GIIM Note: maturase Location: 223 22-22553 bp Feature: domain Description: HNH Note: nucleases Location: 22805-22943 bp Feature: domain Description: HNH Note: nucleases Location: 22805-22943 bp Feature: gene Location: 24053-27790 bp Ori: CRS55490.1 Gene: cph2_2 Feature: domain Description: PBP2_BvgS_HisK_like Location: 24161-24818 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 24161-24818 bp Feature: domain Description: PRK09776 Location: 25031-25502 bp Feature: domain Description: PRK09776 Location: 2503 1-25502 bp Feature: domain Description: PAS Location: 25559-26084 bp Feature: domain Description: PAS Location: 25559-26084 bp Feature: domain Description: PRK10060 Location: 26096-27740 bp Feature: domain Description: PRK10060 Location: 26096-27740 bp Feature: gene Location: 27897-29750 bp Ori: CRS55495.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 27909-29748 bp Feature: domain Description: PRK05658 Location: 27909-29748 bp Feature: gene Location: 46006-47298 bp Ori: CRS55643.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 46096-47290 bp Feature: domain Description: PRK10770 Location: 46096-47290 bp Feature: gene Location: 47279-50050 bp Ori: CRS55650.1 Gene: lptD Feature: domain Description: LptD Location: 47474-50036 bp Feature: domain Description: LptD Location: 47474-5003 6 bp Feature: gene Location: 50183-51493 bp Ori: CRS55661.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50186-50762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50186-50762 bp Feature: domain Description: YkfC Location: 50972-51125 bp Feature: domain Description: YkfC Location: 50972-51125 bp Feature: domain Description: HNH Note: nucleases Location: 51299-51437 bp Feature: domain Description: HNH Note: nucleases Location: 51299-5143 7 bp Feature: gene Location: 52737-52871 bp Feature: gene Location: 53168-54184 bp Ori: CRS55690.1 Feature: domain Description: COG3178 Location: 53171-54170 bp Feature: domain Description: COG3 178 Location: 53 171-54170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVXP01000015.1 Pseudomonas aeruginosa genome assembly P7_London_17_VIM_2_06_09, contig P7_London_17_VIM_2_06_09_contig15, whole genome shotgun sequence (20549 bp)
Overview 1 RT 1: 4819-10508 bp Neighborhood of RT #1 [4819, 10508] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 4819-5655 bp Ori: CRS42323.1 Feature: domain Description: HDOD Location: 4822-5650 bp Feature: domain Description: HDOD Location: 4 822-5650 bp Feature: gene Location: 5756-6700 bp Ori: CRS42340.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 5765-6665 bp Feature: domain Description: YgfZ Location: 5765-6665 bp Feature: gene Location: 8423-9742 bp Ori: CRS42357.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8426-9002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 26-9002 bp Feature: domain Description: YkfC Location: 9200-9356 bp Feature: domain Description: YkfC Location: 9200-9356 bp Feature: domain Description: HNH Note: nucleases Location: 9539-9677 bp Feature: domain Description: HNH Note: nucleases Location: 9539-9677 bp Feature: gene Location: 9818-10072 bp Ori: CRS42371.1 Gene: cptB Feature: domain Description: SdhE Location: 9824-10064 bp Feature: domain Description: SdhE Location: 9824 -10064 bp Feature: gene Location: 10056-10508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)