myRT

myRT report for GCA_001180605.1_P10_London_6_VIM_2_09_09

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Seq: CVVA01000101.1 Pseudomonas aeruginosa genome assembly P10_London_6_VIM_2_09_09, contig P10_London_6_VIM_2_09_09_contig123, whole genome shotgun sequence (281933 bp)
Overview 1 RT 1: 197249-207554 bp 2 RT 2: 223812-231976 bp Neighborhood of RT #1 [197249, 207556] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [223812, 231990] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 197249-198370 bp Ori: CRO90788.1 Feature: domain Description: COG3177 Location: 197267-198359 bp Feature: domain Description: COG31 77 Location: 1 97267-1 98359 bp Feature: gene Location: 198629-198790 bp Feature: gene Location: 199093-200778 bp Ori: CRO90876.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 199150-199390 bp Feature: domain Description: RVT_N Location: 1 991 50-1 99390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199438-200074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 99438-200074 bp Feature: domain Description: GIIM Note: maturase Location: 200128-200359 bp Feature: domain Description: GIIM Note: maturase Location: 2001 28-200359 bp Feature: domain Description: HNH Note: nucleases Location: 200611-200749 bp Feature: domain Description: HNH Note: nucleases Location: 20061 1 -200749 bp Feature: gene Location: 201859-205596 bp Ori: CRO90925.1 Gene: cph2_5 Feature: domain Description: PBP2_BvgS_HisK_like Location: 201967-202624 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 201 967-202624 bp Feature: domain Description: PRK09776 Location: 202837-203308 bp Feature: domain Description: PRK09776 Location: 202837-203308 bp Feature: domain Description: PAS Location: 203365-203890 bp Feature: domain Description: PAS Location: 203365-203890 bp Feature: domain Description: PRK10060 Location: 203902-205546 bp Feature: domain Description: PRK1 0060 Location: 203902-205546 bp Feature: gene Location: 205703-207556 bp Ori: CRO90965.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 205715-207554 bp Feature: domain Description: PRK05658 Location: 20571 5-207554 bp Feature: gene Location: 223812-225104 bp Ori: CRO91656.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 223902-225096 bp Feature: domain Description: PRK1 0770 Location: 223902-225096 bp Feature: gene Location: 225085-227856 bp Ori: CRO91695.1 Gene: lptD Feature: domain Description: LptD Location: 225280-227842 bp Feature: domain Description: LptD Location: 225280-227842 bp Feature: gene Location: 227989-229299 bp Ori: CRO91735.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227992-228568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227992-228568 bp Feature: domain Description: YkfC Location: 228778-228931 bp Feature: domain Description: YkfC Location: 228778-228931 bp Feature: domain Description: HNH Note: nucleases Location: 229105-229243 bp Feature: domain Description: HNH Note: nucleases Location: 2291 05-229243 bp Feature: gene Location: 230543-230677 bp Feature: gene Location: 230974-231990 bp Ori: CRO91812.1 Feature: domain Description: COG3178 Location: 230977-231976 bp Feature: domain Description: COG31 78 Location: 230977-231 976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVVA01000120.1 Pseudomonas aeruginosa genome assembly P10_London_6_VIM_2_09_09, contig P10_London_6_VIM_2_09_09_contig142, whole genome shotgun sequence (35976 bp)
Overview 1 RT 1: 1801-9112 bp Neighborhood of RT #1 [1801, 10167] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1801-2940 bp Ori: CRP40932.1 Gene: recF_4 Feature: domain Description: AAA_21 Location: 1873-1942 bp Feature: domain Description: AAA_2 1 Location: 1873-1942 bp Feature: domain Description: AAA_21 Location: 2416-2746 bp Feature: domain Description: AAA_2 1 Location: 2 416-2 746 bp Feature: gene Location: 2940-3497 bp Feature: gene Location: 3494-6514 bp Ori: CRP41010.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3989-4460 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3989-4460 bp Feature: gene Location: 7429-8292 bp Ori: CRP41042.1 Feature: domain Description: YeeA Location: 7453-8158 bp Feature: domain Description: YeeA Location: 7453-8158 bp Feature: gene Location: 8296-10167 bp Ori: CRP41071.1 Feature: domain Description: DUF262 Location: 8344-9112 bp Feature: domain Description: DUF2 62 Location: 8344-9112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: CVVA01000114.1 Pseudomonas aeruginosa genome assembly P10_London_6_VIM_2_09_09, contig P10_London_6_VIM_2_09_09_contig136, whole genome shotgun sequence (43896 bp)
Overview 1 RT 1: 4561-11371 bp Neighborhood of RT #1 [4561, 11568] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4561-5388 bp Ori: CRP29999.1 Gene: glnQ_5 Feature: domain Description: ABC_phnC Location: 4591-5305 bp Feature: domain Description: ABC_phnC Location: 4591-53 05 bp Feature: gene Location: 5731-6372 bp Ori: CRP30042.1 Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: gene Location: 6761-8029 bp Ori: CRP30077.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-763 1 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: domain Description: GIIM Note: maturase Location: 7709-793 1 bp Feature: gene Location: 8761-8940 bp Feature: gene Location: 10024-11568 bp Ori: CRP30178.1 Feature: domain Description: CHD Location: 10240-10654 bp Feature: domain Description: CHD Location: 10240-10654 bp Feature: domain Description: CHD Location: 10882-11371 bp Feature: domain Description: CHD Location: 10882-113 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVVA01000075.1 Pseudomonas aeruginosa genome assembly P10_London_6_VIM_2_09_09, contig P10_London_6_VIM_2_09_09_contig77, whole genome shotgun sequence (133865 bp)
Overview 1 RT 1: 41847-47536 bp Neighborhood of RT #1 [41847, 47536] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 41847-42683 bp Ori: CRN54440.1 Feature: domain Description: HDOD Location: 41850-42678 bp Feature: domain Description: HDOD Location: 4 1850-4 2678 bp Feature: gene Location: 42784-43728 bp Ori: CRN54454.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 42793-43693 bp Feature: domain Description: YgfZ Location: 4 2793-4 3693 bp Feature: gene Location: 45451-46770 bp Ori: CRN54471.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45454-46030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 54 54 -4 6030 bp Feature: domain Description: YkfC Location: 46228-46384 bp Feature: domain Description: YkfC Location: 4 6228-4 6384 bp Feature: domain Description: HNH Note: nucleases Location: 46567-46705 bp Feature: domain Description: HNH Note: nucleases Location: 4 6567-4 6705 bp Feature: gene Location: 46846-47100 bp Ori: CRN54488.1 Gene: cptB Feature: domain Description: SdhE Location: 46852-47092 bp Feature: domain Description: SdhE Location: 4 6852-4 7092 bp Feature: gene Location: 47084-47536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)