myRT

myRT report for GCA_001180625.1_P11_London_17_VIM_2_10_09

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Seq: CVVH01000144.1 Pseudomonas aeruginosa genome assembly P11_London_17_VIM_2_10_09, contig P11_London_17_VIM_2_10_09_contig155, whole genome shotgun sequence (43894 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRP33740.1 Gene: glnQ_5 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRP33765.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRP33790.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRP33847.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 1 0239-1 0653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 1 0881 -1 1 370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVVH01000033.1 Pseudomonas aeruginosa genome assembly P11_London_17_VIM_2_10_09, contig P11_London_17_VIM_2_10_09_contig33, whole genome shotgun sequence (141310 bp)
Overview 1 RT 1: 56626-66931 bp 2 RT 2: 83189-91353 bp Neighborhood of RT #1 [56626, 66933] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [83189, 91367] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 56626-57747 bp Ori: CRN58557.1 Feature: domain Description: COG3177 Location: 56644-57736 bp Feature: domain Description: COG3177 Location: 56644-57736 bp Feature: gene Location: 58006-58167 bp Feature: gene Location: 58470-60155 bp Ori: CRN58590.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 58527-58767 bp Feature: domain Description: RVT_N Location: 5852 7-58767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58815-59451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58815-59451 bp Feature: domain Description: GIIM Note: maturase Location: 59505-59736 bp Feature: domain Description: GIIM Note: maturase Location: 59505-59736 bp Feature: domain Description: HNH Note: nucleases Location: 59988-60126 bp Feature: domain Description: HNH Note: nucleases Location: 59988-6012 6 bp Feature: gene Location: 61236-64973 bp Ori: CRN58605.1 Gene: cph2_1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 61344-62001 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 61344-62 001 bp Feature: domain Description: PRK09776 Location: 62214-62685 bp Feature: domain Description: PRK09776 Location: 62 2 14-62 685 bp Feature: domain Description: PAS Location: 62742-63267 bp Feature: domain Description: PAS Location: 62 742 -632 67 bp Feature: domain Description: PRK10060 Location: 63279-64923 bp Feature: domain Description: PRK10060 Location: 632 79-6492 3 bp Feature: gene Location: 65080-66933 bp Ori: CRN58622.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 65092-66931 bp Feature: domain Description: PRK05658 Location: 65092 -66931 bp Feature: gene Location: 83189-84481 bp Ori: CRN58888.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 83279-84473 bp Feature: domain Description: PRK10770 Location: 832 79-84473 bp Feature: gene Location: 84462-87233 bp Ori: CRN58901.1 Gene: lptD Feature: domain Description: LptD Location: 84657-87219 bp Feature: domain Description: LptD Location: 84657-872 19 bp Feature: gene Location: 87366-88676 bp Ori: CRN58913.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87369-87945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87369-87945 bp Feature: domain Description: YkfC Location: 88155-88308 bp Feature: domain Description: YkfC Location: 88155-88308 bp Feature: domain Description: HNH Note: nucleases Location: 88482-88620 bp Feature: domain Description: HNH Note: nucleases Location: 88482 -8862 0 bp Feature: gene Location: 89920-90054 bp Feature: gene Location: 90351-91367 bp Ori: CRN58944.1 Feature: domain Description: COG3178 Location: 90354-91353 bp Feature: domain Description: COG3178 Location: 90354-91353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVVH01000112.1 Pseudomonas aeruginosa genome assembly P11_London_17_VIM_2_10_09, contig P11_London_17_VIM_2_10_09_contig123, whole genome shotgun sequence (87511 bp)
Overview 1 RT 1: 40989-46678 bp Neighborhood of RT #1 [40989, 46678] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 40989-41825 bp Ori: CRO32371.1 Feature: domain Description: HDOD Location: 40992-41820 bp Feature: domain Description: HDOD Location: 40992-41820 bp Feature: gene Location: 41926-42870 bp Ori: CRO32454.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 41935-42835 bp Feature: domain Description: YgfZ Location: 4193 5-4283 5 bp Feature: gene Location: 44593-45912 bp Ori: CRO32486.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44596-45172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44596-45172 bp Feature: domain Description: YkfC Location: 45370-45526 bp Feature: domain Description: YkfC Location: 453 70-45526 bp Feature: domain Description: HNH Note: nucleases Location: 45709-45847 bp Feature: domain Description: HNH Note: nucleases Location: 45709-45847 bp Feature: gene Location: 45988-46242 bp Ori: CRO32517.1 Gene: cptB Feature: domain Description: SdhE Location: 45994-46234 bp Feature: domain Description: SdhE Location: 45994-4623 4 bp Feature: gene Location: 46226-46678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVVH01000150.1 Pseudomonas aeruginosa genome assembly P11_London_17_VIM_2_10_09, contig P11_London_17_VIM_2_10_09_contig161, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRP47939.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRP47967.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-284 14 bp Feature: gene Location: 29463-32483 bp Ori: CRP47993.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-304 29 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRP48089.1 Gene: recF_4 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)