myRT

myRT report for GCA_001180645.1_P12_London_17_VIM_2_11_09

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Seq: CVUP01000157.1 Pseudomonas aeruginosa genome assembly P12_London_17_VIM_2_11_09, contig P12_London_17_VIM_2_11_09_contig177, whole genome shotgun sequence (35980 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRO88576.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRO88612.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-2841 4 bp Feature: gene Location: 29463-32483 bp Ori: CRO88663.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRO88749.1 Gene: recF_4 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 331 09-331 78 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVUP01000118.1 Pseudomonas aeruginosa genome assembly P12_London_17_VIM_2_11_09, contig P12_London_17_VIM_2_11_09_contig138, whole genome shotgun sequence (104106 bp)
Overview 1 RT 1: 19422-29727 bp 2 RT 2: 45985-54149 bp Neighborhood of RT #1 [19422, 29729] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [45985, 54163] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 19422-20543 bp Ori: CRN57290.1 Feature: domain Description: COG3177 Location: 19440-20532 bp Feature: domain Description: COG3177 Location: 19440-2 0532 bp Feature: gene Location: 20802-20963 bp Feature: gene Location: 21266-22951 bp Ori: CRN57332.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 21323-21563 bp Feature: domain Description: RVT_N Location: 2 132 3-2 1563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21611-22247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1611-2 2 2 47 bp Feature: domain Description: GIIM Note: maturase Location: 22301-22532 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 301-2 2 532 bp Feature: domain Description: HNH Note: nucleases Location: 22784-22922 bp Feature: domain Description: HNH Note: nucleases Location: 2 2 784-2 2 92 2 bp Feature: gene Location: 24032-27769 bp Ori: CRN57349.1 Gene: cph2_6 Feature: domain Description: PBP2_BvgS_HisK_like Location: 24140-24797 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 4140-2 4797 bp Feature: domain Description: PRK09776 Location: 25010-25481 bp Feature: domain Description: PRK09776 Location: 2 5010-2 5481 bp Feature: domain Description: PAS Location: 25538-26063 bp Feature: domain Description: PAS Location: 2 5538-2 6063 bp Feature: domain Description: PRK10060 Location: 26075-27719 bp Feature: domain Description: PRK10060 Location: 2 6075-2 7719 bp Feature: gene Location: 27876-29729 bp Ori: CRN57364.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 27888-29727 bp Feature: domain Description: PRK05658 Location: 2 7888-2 972 7 bp Feature: gene Location: 45985-47277 bp Ori: CRN57766.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 46075-47269 bp Feature: domain Description: PRK10770 Location: 46075-472 69 bp Feature: gene Location: 47258-50029 bp Ori: CRN57788.1 Gene: lptD Feature: domain Description: LptD Location: 47453-50015 bp Feature: domain Description: LptD Location: 47453-50015 bp Feature: gene Location: 50162-51472 bp Ori: CRN57811.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50165-50741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50165-50741 bp Feature: domain Description: YkfC Location: 50951-51104 bp Feature: domain Description: YkfC Location: 50951-51104 bp Feature: domain Description: HNH Note: nucleases Location: 51278-51416 bp Feature: domain Description: HNH Note: nucleases Location: 512 78-51416 bp Feature: gene Location: 52716-52850 bp Feature: gene Location: 53147-54163 bp Ori: CRN57847.1 Feature: domain Description: COG3178 Location: 53150-54149 bp Feature: domain Description: COG3178 Location: 53150-54149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVUP01000148.1 Pseudomonas aeruginosa genome assembly P12_London_17_VIM_2_11_09, contig P12_London_17_VIM_2_11_09_contig168, whole genome shotgun sequence (43904 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRO64050.1 Gene: glnQ_5 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4590-53 04 bp Feature: gene Location: 5730-6371 bp Ori: CRO64089.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRO64120.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973 -763 0 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-793 0 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRO64202.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 1023 9-10653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-113 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVUP01000113.1 Pseudomonas aeruginosa genome assembly P12_London_17_VIM_2_11_09, contig P12_London_17_VIM_2_11_09_contig130, whole genome shotgun sequence (118869 bp)
Overview 1 RT 1: 43023-48712 bp Neighborhood of RT #1 [43023, 48712] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 43023-43859 bp Ori: CRN46218.1 Feature: domain Description: HDOD Location: 43026-43854 bp Feature: domain Description: HDOD Location: 4 3026-4 3854 bp Feature: gene Location: 43960-44904 bp Ori: CRN46232.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 43969-44869 bp Feature: domain Description: YgfZ Location: 4 3969-4 4 869 bp Feature: gene Location: 46627-47946 bp Ori: CRN46243.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46630-47206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 6630-4 7206 bp Feature: domain Description: YkfC Location: 47404-47560 bp Feature: domain Description: YkfC Location: 4 74 04 -4 7560 bp Feature: domain Description: HNH Note: nucleases Location: 47743-47881 bp Feature: domain Description: HNH Note: nucleases Location: 4 774 3-4 7881 bp Feature: gene Location: 48022-48276 bp Ori: CRN46259.1 Gene: cptB Feature: domain Description: SdhE Location: 48028-48268 bp Feature: domain Description: SdhE Location: 4 8028-4 8268 bp Feature: gene Location: 48260-48712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)