myRT

myRT report for GCA_001180685.1_P14_London_17_VIM_2_01_10

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Seq: CVVT01000236.1 Pseudomonas aeruginosa genome assembly P14_London_17_VIM_2_01_10, contig P14_London_17_VIM_2_01_10_contig247, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRP68631.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRP68657.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-2841 4 bp Feature: gene Location: 29463-32483 bp Ori: CRP68681.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRP68726.1 Gene: recF_4 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 331 09-331 78 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVVT01000166.1 Pseudomonas aeruginosa genome assembly P14_London_17_VIM_2_01_10, contig P14_London_17_VIM_2_01_10_contig166, whole genome shotgun sequence (84505 bp)
Overview 1 RT 1: 1201-10126 bp 2 RT 2: 26384-34548 bp Neighborhood of RT #1 [1201, 10128] RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [26384, 34562] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 1201-1362 bp Feature: gene Location: 1665-3350 bp Ori: CRO65179.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 1722-1962 bp Feature: domain Description: RVT_N Location: 172 2 -1962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2010-2646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 010-2 646 bp Feature: domain Description: GIIM Note: maturase Location: 2700-2931 bp Feature: domain Description: GIIM Note: maturase Location: 2 700-2 931 bp Feature: domain Description: HNH Note: nucleases Location: 3183-3321 bp Feature: domain Description: HNH Note: nucleases Location: 3183-332 1 bp Feature: gene Location: 4431-8168 bp Ori: CRO65213.1 Gene: cph2_4 Feature: domain Description: PBP2_BvgS_HisK_like Location: 4539-5196 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 4539-5196 bp Feature: domain Description: PRK09776 Location: 5409-5880 bp Feature: domain Description: PRK09776 Location: 5409-5880 bp Feature: domain Description: PAS Location: 5937-6462 bp Feature: domain Description: PAS Location: 5937-6462 bp Feature: domain Description: PRK10060 Location: 6474-8118 bp Feature: domain Description: PRK10060 Location: 6474-8118 bp Feature: gene Location: 8275-10128 bp Ori: CRO65242.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 8287-10126 bp Feature: domain Description: PRK05658 Location: 82 87-1012 6 bp Feature: gene Location: 26384-27676 bp Ori: CRO65844.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 26474-27668 bp Feature: domain Description: PRK10770 Location: 2 6474-2 7668 bp Feature: gene Location: 27657-30428 bp Ori: CRO65882.1 Gene: lptD Feature: domain Description: LptD Location: 27852-30414 bp Feature: domain Description: LptD Location: 2 7852 -30414 bp Feature: gene Location: 30561-31871 bp Ori: CRO65913.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30564-31140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30564-31140 bp Feature: domain Description: YkfC Location: 31350-31503 bp Feature: domain Description: YkfC Location: 31350-31503 bp Feature: domain Description: HNH Note: nucleases Location: 31677-31815 bp Feature: domain Description: HNH Note: nucleases Location: 31677-31815 bp Feature: gene Location: 33115-33249 bp Feature: gene Location: 33546-34562 bp Ori: CRO65970.1 Feature: domain Description: COG3178 Location: 33549-34548 bp Feature: domain Description: COG3178 Location: 33549-34548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)
LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVVT01000133.1 Pseudomonas aeruginosa genome assembly P14_London_17_VIM_2_01_10, contig P14_London_17_VIM_2_01_10_contig133, whole genome shotgun sequence (93033 bp)
Overview 1 RT 1: 17225-22914 bp Neighborhood of RT #1 [17225, 22914] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 17225-18061 bp Ori: CRO55180.1 Feature: domain Description: HDOD Location: 17228-18056 bp Feature: domain Description: HDOD Location: 17228-18056 bp Feature: gene Location: 18162-19106 bp Ori: CRO55211.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 18171-19071 bp Feature: domain Description: YgfZ Location: 18171-19071 bp Feature: gene Location: 20829-22148 bp Ori: CRO55244.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20832-21408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2083 2-21408 bp Feature: domain Description: YkfC Location: 21606-21762 bp Feature: domain Description: YkfC Location: 21606-21762 bp Feature: domain Description: HNH Note: nucleases Location: 21945-22083 bp Feature: domain Description: HNH Note: nucleases Location: 21945-22083 bp Feature: gene Location: 22224-22478 bp Ori: CRO55281.1 Gene: cptB Feature: domain Description: SdhE Location: 22230-22470 bp Feature: domain Description: SdhE Location: 2223 0-22470 bp Feature: gene Location: 22462-22914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVVT01000213.1 Pseudomonas aeruginosa genome assembly P14_London_17_VIM_2_01_10, contig P14_London_17_VIM_2_01_10_contig224, whole genome shotgun sequence (51528 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRP29742.1 Gene: glnQ_4 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4 590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRP29758.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRP29772.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRP29838.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)