myRT

myRT report for GCA_001180705.1_P15_London_17_02_10

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Seq: CVVW01000239.1 Pseudomonas aeruginosa genome assembly P15_London_17_02_10, contig P15_London_17_VIM_2_02_10_contig249, whole genome shotgun sequence (141311 bp)
Overview 1 RT 1: 56627-66932 bp 2 RT 2: 83190-91354 bp Neighborhood of RT #1 [56627, 66934] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [83190, 91368] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 56627-57748 bp Ori: CRP91468.1 Feature: domain Description: COG3177 Location: 56645-57737 bp Feature: domain Description: COG31 77 Location: 56645-57737 bp Feature: gene Location: 58007-58168 bp Feature: gene Location: 58471-60156 bp Ori: CRP91528.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 58528-58768 bp Feature: domain Description: RVT_N Location: 58528-58768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58816-59452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5881 6-59452 bp Feature: domain Description: GIIM Note: maturase Location: 59506-59737 bp Feature: domain Description: GIIM Note: maturase Location: 59506-59737 bp Feature: domain Description: HNH Note: nucleases Location: 59989-60127 bp Feature: domain Description: HNH Note: nucleases Location: 59989-601 27 bp Feature: gene Location: 61237-64974 bp Ori: CRP91553.1 Gene: cph2_9 Feature: domain Description: PBP2_BvgS_HisK_like Location: 61345-62002 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61 345-62002 bp Feature: domain Description: PRK09776 Location: 62215-62686 bp Feature: domain Description: PRK09776 Location: 6221 5-62686 bp Feature: domain Description: PAS Location: 62743-63268 bp Feature: domain Description: PAS Location: 62743-63268 bp Feature: domain Description: PRK10060 Location: 63280-64924 bp Feature: domain Description: PRK1 0060 Location: 63280-64924 bp Feature: gene Location: 65081-66934 bp Ori: CRP91581.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 65093-66932 bp Feature: domain Description: PRK05658 Location: 65093-66932 bp Feature: gene Location: 83190-84482 bp Ori: CRP92095.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 83280-84474 bp Feature: domain Description: PRK1 0770 Location: 83280-84474 bp Feature: gene Location: 84463-87234 bp Ori: CRP92127.1 Gene: lptD Feature: domain Description: LptD Location: 84658-87220 bp Feature: domain Description: LptD Location: 84658-87220 bp Feature: gene Location: 87367-88677 bp Ori: CRP92165.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87370-87946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87370-87946 bp Feature: domain Description: YkfC Location: 88156-88309 bp Feature: domain Description: YkfC Location: 881 56-88309 bp Feature: domain Description: HNH Note: nucleases Location: 88483-88621 bp Feature: domain Description: HNH Note: nucleases Location: 88483-88621 bp Feature: gene Location: 89921-90055 bp Feature: gene Location: 90352-91368 bp Ori: CRP92217.1 Feature: domain Description: COG3178 Location: 90355-91354 bp Feature: domain Description: COG31 78 Location: 90355-91 354 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVVW01000247.1 Pseudomonas aeruginosa genome assembly P15_London_17_02_10, contig P15_London_17_VIM_2_02_10_contig257, whole genome shotgun sequence (42483 bp)
Overview 1 RT 1: 3147-9957 bp Neighborhood of RT #1 [3147, 10154] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 3147-3974 bp Ori: CRQ04242.1 Gene: glnQ_3 Feature: domain Description: ABC_phnC Location: 3177-3891 bp Feature: domain Description: ABC_phnC Location: 3177-3891 bp Feature: gene Location: 4317-4958 bp Ori: CRQ04261.1 Feature: domain Description: DUF772 Location: 4467-4662 bp Feature: domain Description: DUF772 Location: 4467-4662 bp Feature: gene Location: 5347-6615 bp Ori: CRQ04279.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5560-6217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5560-62 17 bp Feature: domain Description: GIIM Note: maturase Location: 6295-6517 bp Feature: domain Description: GIIM Note: maturase Location: 62 95-6517 bp Feature: gene Location: 7347-7526 bp Feature: gene Location: 8610-10154 bp Ori: CRQ04319.1 Feature: domain Description: CHD Location: 8826-9240 bp Feature: domain Description: CHD Location: 882 6-92 40 bp Feature: domain Description: CHD Location: 9468-9957 bp Feature: domain Description: CHD Location: 9468-9957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVVW01000177.1 Pseudomonas aeruginosa genome assembly P15_London_17_02_10, contig P15_London_17_VIM_2_02_10_contig177, whole genome shotgun sequence (80612 bp)
Overview 1 RT 1: 4779-10468 bp Neighborhood of RT #1 [4779, 10468] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 4779-5615 bp Ori: CRP15904.1 Feature: domain Description: HDOD Location: 4782-5610 bp Feature: domain Description: HDOD Location: 4782-5610 bp Feature: gene Location: 5716-6660 bp Ori: CRP15936.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 5725-6625 bp Feature: domain Description: YgfZ Location: 5725-6625 bp Feature: gene Location: 8383-9702 bp Ori: CRP15973.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8386-8962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 86-8962 bp Feature: domain Description: YkfC Location: 9160-9316 bp Feature: domain Description: YkfC Location: 9160-93 16 bp Feature: domain Description: HNH Note: nucleases Location: 9499-9637 bp Feature: domain Description: HNH Note: nucleases Location: 9499-963 7 bp Feature: gene Location: 9778-10032 bp Ori: CRP16013.1 Gene: cptB Feature: domain Description: SdhE Location: 9784-10024 bp Feature: domain Description: SdhE Location: 9784-10024 bp Feature: gene Location: 10016-10468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVVW01000262.1 Pseudomonas aeruginosa genome assembly P15_London_17_02_10, contig P15_London_17_VIM_2_02_10_contig272, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRQ24689.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRQ24708.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-284 14 bp Feature: gene Location: 29463-32483 bp Ori: CRQ24731.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-304 29 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRQ24772.1 Gene: recF_4 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)