myRT

myRT report for GCA_001180765.1_P18_London_17_VIM_2_04_10

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Seq: CVVY01000028.1 Pseudomonas aeruginosa genome assembly P18_London_17_VIM_2_04_10, contig P18_London_17_VIM_2_04_10_contig28, whole genome shotgun sequence (19762 bp)
Overview 1 RT 1: 4537-11347 bp Neighborhood of RT #1 [4537, 11544] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4537-5364 bp Ori: CRO38719.1 Gene: glnQ_1 Feature: domain Description: ABC_phnC Location: 4567-5281 bp Feature: domain Description: ABC_phnC Location: 4567-5281 bp Feature: gene Location: 5707-6348 bp Ori: CRO38753.1 Feature: domain Description: DUF772 Location: 5857-6052 bp Feature: domain Description: DUF772 Location: 5857-6052 bp Feature: gene Location: 6737-8005 bp Ori: CRO38781.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6950-7607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6950-7607 bp Feature: domain Description: GIIM Note: maturase Location: 7685-7907 bp Feature: domain Description: GIIM Note: maturase Location: 7685-7907 bp Feature: gene Location: 8737-8916 bp Feature: gene Location: 10000-11544 bp Ori: CRO38833.1 Feature: domain Description: CHD Location: 10216-10630 bp Feature: domain Description: CHD Location: 1 021 6-1 0630 bp Feature: domain Description: CHD Location: 10858-11347 bp Feature: domain Description: CHD Location: 1 0858-1 1 347 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVVY01000069.1 Pseudomonas aeruginosa genome assembly P18_London_17_VIM_2_04_10, contig P18_London_17_VIM_2_04_10_contig69, whole genome shotgun sequence (14335 bp)
Overview 1 RT 1: 3563-11733 bp Neighborhood of RT #1 [3563, 11741] COG3178 RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 3563-4579 bp Ori: CRO70167.1 Feature: domain Description: COG3178 Location: 3566-4565 bp Feature: domain Description: COG3178 Location: 3566-4565 bp Feature: gene Location: 4876-5010 bp Feature: gene Location: 6254-7564 bp Ori: CRO70223.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6257-6833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 57-6833 bp Feature: domain Description: YkfC Location: 7043-7196 bp Feature: domain Description: YkfC Location: 7043-7196 bp Feature: domain Description: HNH Note: nucleases Location: 7370-7508 bp Feature: domain Description: HNH Note: nucleases Location: 7370-7508 bp Feature: gene Location: 7697-10468 bp Ori: CRO70255.1 Gene: lptD Feature: domain Description: LptD Location: 7892-10454 bp Feature: domain Description: LptD Location: 7892 -10454 bp Feature: gene Location: 10449-11741 bp Ori: CRO70285.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 10539-11733 bp Feature: domain Description: PRK10770 Location: 10539-11733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: CVVY01000122.1 Pseudomonas aeruginosa genome assembly P18_London_17_VIM_2_04_10, contig P18_London_17_VIM_2_04_10_contig122, whole genome shotgun sequence (59759 bp)
Overview 1 RT 1: 32596-38285 bp Neighborhood of RT #1 [32596, 38285] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 32596-33432 bp Ori: CRP03898.1 Feature: domain Description: HDOD Location: 32599-33427 bp Feature: domain Description: HDOD Location: 3 2599-3 3 427 bp Feature: gene Location: 33533-34477 bp Ori: CRP03925.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 33542-34442 bp Feature: domain Description: YgfZ Location: 3 3 542-3 4442 bp Feature: gene Location: 36200-37519 bp Ori: CRP03953.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36203-36779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6203 -3 6779 bp Feature: domain Description: YkfC Location: 36977-37133 bp Feature: domain Description: YkfC Location: 3 6977-3 713 3 bp Feature: domain Description: HNH Note: nucleases Location: 37316-37454 bp Feature: domain Description: HNH Note: nucleases Location: 3 73 16-3 7454 bp Feature: gene Location: 37595-37849 bp Ori: CRP03981.1 Gene: cptB Feature: domain Description: SdhE Location: 37601-37841 bp Feature: domain Description: SdhE Location: 3 7601-3 7841 bp Feature: gene Location: 37833-38285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVVY01000029.1 Pseudomonas aeruginosa genome assembly P18_London_17_VIM_2_04_10, contig P18_London_17_VIM_2_04_10_contig29, whole genome shotgun sequence (19756 bp)
Overview 1 RT 1: 9588-17760 bp Neighborhood of RT #1 [9588, 17954] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 9588-11459 bp Ori: CRO39394.1 Feature: domain Description: DUF262 Location: 9636-10404 bp Feature: domain Description: DUF262 Location: 9636-104 04 bp Feature: gene Location: 11463-12326 bp Ori: CRO39420.1 Feature: domain Description: YeeA Location: 11487-12192 bp Feature: domain Description: YeeA Location: 114 87-12192 bp Feature: gene Location: 13241-16261 bp Ori: CRO39445.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13736-14207 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13736-14 207 bp Feature: gene Location: 16258-16815 bp Feature: gene Location: 16815-17954 bp Ori: CRO39500.1 Gene: recF_1 Feature: domain Description: AAA_21 Location: 16887-16956 bp Feature: domain Description: AAA_21 Location: 16887-16956 bp Feature: domain Description: AAA_21 Location: 17430-17760 bp Feature: domain Description: AAA_21 Location: 174 30-17760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVVY01000332.1 Pseudomonas aeruginosa genome assembly P18_London_17_VIM_2_04_10, contig P18_London_17_VIM_2_04_10_contig332, whole genome shotgun sequence (43389 bp)
Overview 1 RT 1: 13661-23957 bp Neighborhood of RT #1 [13661, 23968] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 13661-15514 bp Ori: CRP73879.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 13673-15512 bp Feature: domain Description: PRK05 65 8 Location: 13673-15 5 12 bp Feature: gene Location: 15621-19358 bp Ori: CRP73897.1 Gene: cph2_7 Feature: domain Description: PBP2_BvgS_HisK_like Location: 15729-16386 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 15 729-16386 bp Feature: domain Description: PRK09776 Location: 16599-17070 bp Feature: domain Description: PRK09776 Location: 165 99-17070 bp Feature: domain Description: PAS Location: 17127-17652 bp Feature: domain Description: PAS Location: 17127-1765 2 bp Feature: domain Description: PRK10060 Location: 17664-19308 bp Feature: domain Description: PRK10060 Location: 17664-19308 bp Feature: gene Location: 20439-22124 bp Ori: CRP73931.1 Gene: ltrA_4 Feature: domain Description: RVT_N Location: 20496-20736 bp Feature: domain Description: RVT_N Location: 20496-20736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20784-21420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20784-21420 bp Feature: domain Description: GIIM Note: maturase Location: 21474-21705 bp Feature: domain Description: GIIM Note: maturase Location: 21474-21705 bp Feature: domain Description: HNH Note: nucleases Location: 21957-22095 bp Feature: domain Description: HNH Note: nucleases Location: 2195 7-22095 bp Feature: gene Location: 22427-22588 bp Feature: gene Location: 22847-23968 bp Ori: CRP73994.1 Feature: domain Description: COG3177 Location: 22865-23957 bp Feature: domain Description: COG3177 Location: 22865 -2395 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )