myRT

myRT report for GCA_001180785.1_P19_London_7_VIM_2_05_10

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Seq: CVVU01000133.1 Pseudomonas aeruginosa genome assembly P19_London_7_VIM_2_05_10, contig P19_London_7_VIM_2_05_10_contig133, whole genome shotgun sequence (87145 bp)
Overview 1 RT 1: 40829-46513 bp Neighborhood of RT #1 [40829, 46518] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40829-41281 bp Feature: gene Location: 41265-41519 bp Ori: CRO68011.1 Gene: cptB Feature: domain Description: SdhE Location: 41271-41511 bp Feature: domain Description: SdhE Location: 41 271 -41 51 1 bp Feature: gene Location: 41595-42914 bp Ori: CRO68042.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41598-42174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 598-421 74 bp Feature: domain Description: YkfC Location: 42372-42528 bp Feature: domain Description: YkfC Location: 42372-42528 bp Feature: domain Description: HNH Note: nucleases Location: 42711-42849 bp Feature: domain Description: HNH Note: nucleases Location: 4271 1 -42849 bp Feature: gene Location: 44637-45581 bp Ori: CRO68077.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 44646-45546 bp Feature: domain Description: YgfZ Location: 44646-45546 bp Feature: gene Location: 45682-46518 bp Ori: CRO68106.1 Feature: domain Description: HDOD Location: 45685-46513 bp Feature: domain Description: HDOD Location: 45685-4651 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CVVU01000111.1 Pseudomonas aeruginosa genome assembly P19_London_7_VIM_2_05_10, contig P19_London_7_VIM_2_05_10_contig111, whole genome shotgun sequence (281921 bp)
Overview 1 RT 1: 49944-58114 bp 2 RT 2: 74378-84674 bp Neighborhood of RT #1 [49944, 58122] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74378, 84685] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 49944-50960 bp Ori: CRO54874.1 Feature: domain Description: COG3178 Location: 49947-50946 bp Feature: domain Description: COG3178 Location: 49947-50946 bp Feature: gene Location: 51257-51391 bp Feature: gene Location: 52233-53945 bp Ori: CRO54927.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 52290-52533 bp Feature: domain Description: RVT_N Location: 52 2 90-52 533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52578-53214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 578-532 14 bp Feature: domain Description: YkfC Location: 53424-53574 bp Feature: domain Description: YkfC Location: 5342 4-53574 bp Feature: domain Description: HNH Note: nucleases Location: 53751-53889 bp Feature: domain Description: HNH Note: nucleases Location: 53751-53889 bp Feature: gene Location: 54078-56849 bp Ori: CRO54948.1 Gene: lptD Feature: domain Description: LptD Location: 54273-56835 bp Feature: domain Description: LptD Location: 542 73-56835 bp Feature: gene Location: 56830-58122 bp Ori: CRO54979.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 56920-58114 bp Feature: domain Description: PRK10770 Location: 5692 0-58114 bp Feature: gene Location: 74378-76231 bp Ori: CRO55513.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 74390-76229 bp Feature: domain Description: PRK05658 Location: 74390-762 2 9 bp Feature: gene Location: 76338-80075 bp Ori: CRO55538.1 Gene: cph2_5 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76446-77103 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 76446-77103 bp Feature: domain Description: PRK09776 Location: 77316-77787 bp Feature: domain Description: PRK09776 Location: 77316-77787 bp Feature: domain Description: PAS Location: 77844-78369 bp Feature: domain Description: PAS Location: 77844-78369 bp Feature: domain Description: PRK10060 Location: 78381-80025 bp Feature: domain Description: PRK10060 Location: 78381-8002 5 bp Feature: gene Location: 81156-82841 bp Ori: CRO55559.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 81213-81453 bp Feature: domain Description: RVT_N Location: 812 13-81453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81501-82137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81501-82 137 bp Feature: domain Description: GIIM Note: maturase Location: 82191-82422 bp Feature: domain Description: GIIM Note: maturase Location: 82 191-82 42 2 bp Feature: domain Description: HNH Note: nucleases Location: 82674-82812 bp Feature: domain Description: HNH Note: nucleases Location: 82 674-82 812 bp Feature: gene Location: 83144-83305 bp Feature: gene Location: 83564-84685 bp Ori: CRO55611.1 Feature: domain Description: COG3177 Location: 83582-84674 bp Feature: domain Description: COG3177 Location: 83582 -84674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: CVVU01000253.1 Pseudomonas aeruginosa genome assembly P19_London_7_VIM_2_05_10, contig P19_London_7_VIM_2_05_10_contig273, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRP91338.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRP91359.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-28414 bp Feature: gene Location: 29463-32483 bp Ori: CRP91380.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-3 0429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRP91426.1 Gene: recF_4 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 3 3 109-3 3 178 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 3 3 652-3 3 982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVVU01000261.1 Pseudomonas aeruginosa genome assembly P19_London_7_VIM_2_05_10, contig P19_London_7_VIM_2_05_10_contig281, whole genome shotgun sequence (32180 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRP99596.1 Gene: glnQ_4 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4 590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRP99619.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRP99640.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRP99691.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)