myRT

myRT report for GCA_001180805.1_P20_London_17_VIM_2_05_10

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Seq: CVUO01000165.1 Pseudomonas aeruginosa genome assembly P20_London_17_VIM_2_05_10, contig P20_London_17_VIM_2_05_10_contig176, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 1803-9114 bp Neighborhood of RT #1 [1803, 10169] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1803-2942 bp Ori: CRN91138.1 Gene: recF_4 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 1 875-1 944 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_21 Location: 241 8-2748 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRN91198.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991 -4462 bp Feature: gene Location: 7431-8294 bp Ori: CRN91226.1 Feature: domain Description: YeeA Location: 7455-8160 bp Feature: domain Description: YeeA Location: 7455-81 60 bp Feature: gene Location: 8298-10169 bp Ori: CRN91255.1 Feature: domain Description: DUF262 Location: 8346-9114 bp Feature: domain Description: DUF262 Location: 8346-91 1 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: CVUO01000154.1 Pseudomonas aeruginosa genome assembly P20_London_17_VIM_2_05_10, contig P20_London_17_VIM_2_05_10_contig165, whole genome shotgun sequence (43910 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRN73978.1 Gene: glnQ_4 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRN74006.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRN74026.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRN74072.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 102 39-10653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVUO01000088.1 Pseudomonas aeruginosa genome assembly P20_London_17_VIM_2_05_10, contig P20_London_17_VIM_2_05_10_contig88, whole genome shotgun sequence (118511 bp)
Overview 1 RT 1: 42672-48361 bp Neighborhood of RT #1 [42672, 48361] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 42672-43508 bp Ori: CRN23354.1 Feature: domain Description: HDOD Location: 42675-43503 bp Feature: domain Description: HDOD Location: 42675-43 503 bp Feature: gene Location: 43609-44553 bp Ori: CRN23359.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 43618-44518 bp Feature: domain Description: YgfZ Location: 43 618-44518 bp Feature: gene Location: 46276-47595 bp Ori: CRN23363.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46279-46855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46279-46855 bp Feature: domain Description: YkfC Location: 47053-47209 bp Feature: domain Description: YkfC Location: 47053 -47209 bp Feature: domain Description: HNH Note: nucleases Location: 47392-47530 bp Feature: domain Description: HNH Note: nucleases Location: 473 92-4753 0 bp Feature: gene Location: 47671-47925 bp Ori: CRN23369.1 Gene: cptB Feature: domain Description: SdhE Location: 47677-47917 bp Feature: domain Description: SdhE Location: 47677-47917 bp Feature: gene Location: 47909-48361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVUO01000120.1 Pseudomonas aeruginosa genome assembly P20_London_17_VIM_2_05_10, contig P20_London_17_VIM_2_05_10_contig131, whole genome shotgun sequence (104122 bp)
Overview 1 RT 1: 19438-29743 bp 2 RT 2: 46001-54165 bp Neighborhood of RT #1 [19438, 29745] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [46001, 54179] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 19438-20559 bp Ori: CRN31161.1 Feature: domain Description: COG3177 Location: 19456-20548 bp Feature: domain Description: COG3177 Location: 194 56-2054 8 bp Feature: gene Location: 20818-20979 bp Feature: gene Location: 21282-22967 bp Ori: CRN31186.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 21339-21579 bp Feature: domain Description: RVT_N Location: 21339-21579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21627-22263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21627-22263 bp Feature: domain Description: GIIM Note: maturase Location: 22317-22548 bp Feature: domain Description: GIIM Note: maturase Location: 22317-2254 8 bp Feature: domain Description: HNH Note: nucleases Location: 22800-22938 bp Feature: domain Description: HNH Note: nucleases Location: 22800-22938 bp Feature: gene Location: 24048-27785 bp Ori: CRN31199.1 Gene: cph2_5 Feature: domain Description: PBP2_BvgS_HisK_like Location: 24156-24813 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 24 156-24 813 bp Feature: domain Description: PRK09776 Location: 25026-25497 bp Feature: domain Description: PRK09776 Location: 25026-254 97 bp Feature: domain Description: PAS Location: 25554-26079 bp Feature: domain Description: PAS Location: 25554 -26079 bp Feature: domain Description: PRK10060 Location: 26091-27735 bp Feature: domain Description: PRK10060 Location: 26091-27735 bp Feature: gene Location: 27892-29745 bp Ori: CRN31210.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 27904-29743 bp Feature: domain Description: PRK05658 Location: 27904 -2974 3 bp Feature: gene Location: 46001-47293 bp Ori: CRN31386.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 46091-47285 bp Feature: domain Description: PRK10770 Location: 4 6091-4 7285 bp Feature: gene Location: 47274-50045 bp Ori: CRN31397.1 Gene: lptD Feature: domain Description: LptD Location: 47469-50031 bp Feature: domain Description: LptD Location: 4 74 69-50031 bp Feature: gene Location: 50178-51488 bp Ori: CRN31408.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50181-50757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50181-50757 bp Feature: domain Description: YkfC Location: 50967-51120 bp Feature: domain Description: YkfC Location: 50967-51120 bp Feature: domain Description: HNH Note: nucleases Location: 51294-51432 bp Feature: domain Description: HNH Note: nucleases Location: 51294 -514 32 bp Feature: gene Location: 52732-52866 bp Feature: gene Location: 53163-54179 bp Ori: CRN31429.1 Feature: domain Description: COG3178 Location: 53166-54165 bp Feature: domain Description: COG3178 Location: 53166-54 165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )