myRT

myRT report for GCA_001180845.1_P22_London_17_VIM_2_06_10

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Seq: CVVI01000153.1 Pseudomonas aeruginosa genome assembly P22_London_17_VIM_2_06_10, contig P22_London_17_VIM_2_06_10_contig174, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 1803-9114 bp Neighborhood of RT #1 [1803, 10169] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1803-2942 bp Ori: CRP83411.1 Gene: recF_4 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 1 875-1 944 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_21 Location: 241 8-2748 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRP83481.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991 -4462 bp Feature: gene Location: 7431-8294 bp Ori: CRP83513.1 Feature: domain Description: YeeA Location: 7455-8160 bp Feature: domain Description: YeeA Location: 7455-81 60 bp Feature: gene Location: 8298-10169 bp Ori: CRP83540.1 Feature: domain Description: DUF262 Location: 8346-9114 bp Feature: domain Description: DUF262 Location: 8346-91 1 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: CVVI01000188.1 Pseudomonas aeruginosa genome assembly P22_London_17_VIM_2_06_10, contig P22_London_17_VIM_2_06_10_contig209, whole genome shotgun sequence (11713 bp)
Overview 1 RT 1: 147-7071 bp Neighborhood of RT #1 [147, 7154] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 147-1691 bp Ori: CRQ32698.1 Feature: domain Description: CHD Location: 363-777 bp Feature: domain Description: CHD Location: 363-777 bp Feature: domain Description: CHD Location: 1005-1494 bp Feature: domain Description: CHD Location: 1005-1494 bp Feature: gene Location: 2775-2954 bp Feature: gene Location: 3686-4954 bp Ori: CRQ32751.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3899-4556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3899-4556 bp Feature: domain Description: GIIM Note: maturase Location: 4634-4856 bp Feature: domain Description: GIIM Note: maturase Location: 4634-4856 bp Feature: gene Location: 5343-5984 bp Ori: CRQ32781.1 Feature: domain Description: DUF772 Location: 5493-5688 bp Feature: domain Description: DUF772 Location: 5493-5688 bp Feature: gene Location: 6327-7154 bp Ori: CRQ32801.1 Gene: glnQ_5 Feature: domain Description: ABC_phnC Location: 6357-7071 bp Feature: domain Description: ABC_phnC Location: 6357-7071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: CVVI01000132.1 Pseudomonas aeruginosa genome assembly P22_London_17_VIM_2_06_10, contig P22_London_17_VIM_2_06_10_contig153, whole genome shotgun sequence (276818 bp)
Overview 1 RT 1: 49944-58114 bp 2 RT 2: 74378-84674 bp Neighborhood of RT #1 [49944, 58122] COG3178 RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74378, 84685] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 49944-50960 bp Ori: CRP26065.1 Feature: domain Description: COG3178 Location: 49947-50946 bp Feature: domain Description: COG3 178 Location: 49947-50946 bp Feature: gene Location: 51257-51391 bp Feature: gene Location: 52635-53945 bp Ori: CRP26120.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52638-53214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5263 8-53 214 bp Feature: domain Description: YkfC Location: 53424-53577 bp Feature: domain Description: YkfC Location: 53 424-53 577 bp Feature: domain Description: HNH Note: nucleases Location: 53751-53889 bp Feature: domain Description: HNH Note: nucleases Location: 53 751-53 889 bp Feature: gene Location: 54078-56849 bp Ori: CRP26153.1 Gene: lptD Feature: domain Description: LptD Location: 54273-56835 bp Feature: domain Description: LptD Location: 54273 -5683 5 bp Feature: gene Location: 56830-58122 bp Ori: CRP26188.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 56920-58114 bp Feature: domain Description: PRK10770 Location: 56920-58114 bp Feature: gene Location: 74378-76231 bp Ori: CRP26866.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 74390-76229 bp Feature: domain Description: PRK05658 Location: 743 90-76229 bp Feature: gene Location: 76338-80075 bp Ori: CRP26905.1 Gene: cph2_4 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76446-77103 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76446-77103 bp Feature: domain Description: PRK09776 Location: 77316-77787 bp Feature: domain Description: PRK09776 Location: 773 16-77787 bp Feature: domain Description: PAS Location: 77844-78369 bp Feature: domain Description: PAS Location: 77844-783 69 bp Feature: domain Description: PRK10060 Location: 78381-80025 bp Feature: domain Description: PRK10060 Location: 783 81-80025 bp Feature: gene Location: 81156-82841 bp Ori: CRP26943.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 81213-81453 bp Feature: domain Description: RVT_N Location: 81213 -81453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81501-82137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81501-8213 7 bp Feature: domain Description: GIIM Note: maturase Location: 82191-82422 bp Feature: domain Description: GIIM Note: maturase Location: 82191-82422 bp Feature: domain Description: HNH Note: nucleases Location: 82674-82812 bp Feature: domain Description: HNH Note: nucleases Location: 82674-82812 bp Feature: gene Location: 83144-83305 bp Feature: gene Location: 83564-84685 bp Ori: CRP27017.1 Feature: domain Description: COG3177 Location: 83582-84674 bp Feature: domain Description: COG3 177 Location: 83 582-84674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: CVVI01000120.1 Pseudomonas aeruginosa genome assembly P22_London_17_VIM_2_06_10, contig P22_London_17_VIM_2_06_10_contig141, whole genome shotgun sequence (88366 bp)
Overview 1 RT 1: 40831-46515 bp Neighborhood of RT #1 [40831, 46520] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40831-41283 bp Feature: gene Location: 41267-41521 bp Ori: CRO80154.1 Gene: cptB Feature: domain Description: SdhE Location: 41273-41513 bp Feature: domain Description: SdhE Location: 4 1273-4 1513 bp Feature: gene Location: 41597-42916 bp Ori: CRO80189.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41600-42176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 1600-4 2176 bp Feature: domain Description: YkfC Location: 42374-42530 bp Feature: domain Description: YkfC Location: 4 2374 -4 2530 bp Feature: domain Description: HNH Note: nucleases Location: 42713-42851 bp Feature: domain Description: HNH Note: nucleases Location: 4 2713-4 2851 bp Feature: gene Location: 44639-45583 bp Ori: CRO80230.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 44648-45548 bp Feature: domain Description: YgfZ Location: 4 4 64 8-4 554 8 bp Feature: gene Location: 45684-46520 bp Ori: CRO80265.1 Feature: domain Description: HDOD Location: 45687-46515 bp Feature: domain Description: HDOD Location: 4 5687-4 6515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)