myRT

myRT report for GCA_001180885.1_P24_London_17_VIM_2_08_10

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Seq: CVUR01000168.1 Pseudomonas aeruginosa genome assembly P24_London_17_VIM_2_08_10, contig P24_London_17_VIM_2_08_10_contig181, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 1803-9114 bp Neighborhood of RT #1 [1803, 10169] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1803-2942 bp Ori: CRO41179.1 Gene: recF_4 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 1 875-1 944 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_21 Location: 241 8-2748 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRO41237.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991 -4462 bp Feature: gene Location: 7431-8294 bp Ori: CRO41271.1 Feature: domain Description: YeeA Location: 7455-8160 bp Feature: domain Description: YeeA Location: 7455-81 60 bp Feature: gene Location: 8298-10169 bp Ori: CRO41304.1 Feature: domain Description: DUF262 Location: 8346-9114 bp Feature: domain Description: DUF262 Location: 8346-91 1 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: CVUR01000160.1 Pseudomonas aeruginosa genome assembly P24_London_17_VIM_2_08_10, contig P24_London_17_VIM_2_08_10_contig173, whole genome shotgun sequence (43894 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRO19771.1 Gene: glnQ_3 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRO19808.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRO19849.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRO19914.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 102 39-10653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVUR01000146.1 Pseudomonas aeruginosa genome assembly P24_London_17_VIM_2_08_10, contig P24_London_17_VIM_2_08_10_contig159, whole genome shotgun sequence (63754 bp)
Overview 1 RT 1: 17237-22926 bp Neighborhood of RT #1 [17237, 22926] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 17237-18073 bp Ori: CRN81439.1 Feature: domain Description: HDOD Location: 17240-18068 bp Feature: domain Description: HDOD Location: 17240-18068 bp Feature: gene Location: 18174-19118 bp Ori: CRN81461.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 18183-19083 bp Feature: domain Description: YgfZ Location: 18183 -19083 bp Feature: gene Location: 20841-22160 bp Ori: CRN81474.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20844-21420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20844-21420 bp Feature: domain Description: YkfC Location: 21618-21774 bp Feature: domain Description: YkfC Location: 21618-21774 bp Feature: domain Description: HNH Note: nucleases Location: 21957-22095 bp Feature: domain Description: HNH Note: nucleases Location: 21957-22095 bp Feature: gene Location: 22236-22490 bp Ori: CRN81499.1 Gene: cptB Feature: domain Description: SdhE Location: 22242-22482 bp Feature: domain Description: SdhE Location: 22242-22482 bp Feature: gene Location: 22474-22926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVUR01000099.1 Pseudomonas aeruginosa genome assembly P24_London_17_VIM_2_08_10, contig P24_London_17_VIM_2_08_10_contig99, whole genome shotgun sequence (116867 bp)
Overview 1 RT 1: 32183-42488 bp 2 RT 2: 58746-66910 bp Neighborhood of RT #1 [32183, 42490] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [58746, 66924] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 32183-33304 bp Ori: CRN30541.1 Feature: domain Description: COG3177 Location: 32201-33293 bp Feature: domain Description: COG3177 Location: 32201-33293 bp Feature: gene Location: 33563-33724 bp Feature: gene Location: 34027-35712 bp Ori: CRN30554.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 34084-34324 bp Feature: domain Description: RVT_N Location: 34 084 -34 324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34372-35008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 372-35008 bp Feature: domain Description: GIIM Note: maturase Location: 35062-35293 bp Feature: domain Description: GIIM Note: maturase Location: 35062-35293 bp Feature: domain Description: HNH Note: nucleases Location: 35545-35683 bp Feature: domain Description: HNH Note: nucleases Location: 3554 5-35683 bp Feature: gene Location: 36793-40530 bp Ori: CRN30563.1 Gene: cph2_3 Feature: domain Description: PBP2_BvgS_HisK_like Location: 36901-37558 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 36901-37558 bp Feature: domain Description: PRK09776 Location: 37771-38242 bp Feature: domain Description: PRK09776 Location: 37771-3824 2 bp Feature: domain Description: PAS Location: 38299-38824 bp Feature: domain Description: PAS Location: 38299-38824 bp Feature: domain Description: PRK10060 Location: 38836-40480 bp Feature: domain Description: PRK10060 Location: 38836-4 04 80 bp Feature: gene Location: 40637-42490 bp Ori: CRN30573.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 40649-42488 bp Feature: domain Description: PRK05658 Location: 4 064 9-4 24 88 bp Feature: gene Location: 58746-60038 bp Ori: CRN30700.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 58836-60030 bp Feature: domain Description: PRK10770 Location: 58836-60030 bp Feature: gene Location: 60019-62790 bp Ori: CRN30708.1 Gene: lptD Feature: domain Description: LptD Location: 60214-62776 bp Feature: domain Description: LptD Location: 60214 -62776 bp Feature: gene Location: 62923-64233 bp Ori: CRN30715.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62926-63502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62926-63502 bp Feature: domain Description: YkfC Location: 63712-63865 bp Feature: domain Description: YkfC Location: 63712-63865 bp Feature: domain Description: HNH Note: nucleases Location: 64039-64177 bp Feature: domain Description: HNH Note: nucleases Location: 64 039-64 177 bp Feature: gene Location: 65477-65611 bp Feature: gene Location: 65908-66924 bp Ori: CRN30725.1 Feature: domain Description: COG3178 Location: 65911-66910 bp Feature: domain Description: COG3178 Location: 65911-66910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )