myRT

myRT report for GCA_001180925.1_P26_Wales_1_VIM_2_11_10

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Seq: CVVN01000044.1 Pseudomonas aeruginosa genome assembly P26_Wales_1_VIM_2_11_10, contig P26_Wales_1_VIM_2_11_10_contig44, whole genome shotgun sequence (132226 bp)
Overview 1 RT 1: 40833-46517 bp Neighborhood of RT #1 [40833, 46522] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40833-41285 bp Feature: gene Location: 41269-41523 bp Ori: CRN83249.1 Gene: cptB Feature: domain Description: SdhE Location: 41275-41515 bp Feature: domain Description: SdhE Location: 41 275-41 51 5 bp Feature: gene Location: 41599-42918 bp Ori: CRN83274.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41602-42178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 602-421 78 bp Feature: domain Description: YkfC Location: 42376-42532 bp Feature: domain Description: YkfC Location: 42376-42532 bp Feature: domain Description: HNH Note: nucleases Location: 42715-42853 bp Feature: domain Description: HNH Note: nucleases Location: 4271 5-42853 bp Feature: gene Location: 44641-45585 bp Ori: CRN83297.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 44650-45550 bp Feature: domain Description: YgfZ Location: 44650-45550 bp Feature: gene Location: 45686-46522 bp Ori: CRN83321.1 Feature: domain Description: HDOD Location: 45689-46517 bp Feature: domain Description: HDOD Location: 45689-4651 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CVVN01000011.1 Pseudomonas aeruginosa genome assembly P26_Wales_1_VIM_2_11_10, contig P26_Wales_1_VIM_2_11_10_contig11, whole genome shotgun sequence (152999 bp)
Overview 1 RT 1: 68315-78620 bp 2 RT 2: 94878-103042 bp Neighborhood of RT #1 [68315, 78622] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [94878, 103056] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 68315-69436 bp Ori: CRN68659.1 Feature: domain Description: COG3177 Location: 68333-69425 bp Feature: domain Description: COG3177 Location: 68333-6942 5 bp Feature: gene Location: 69695-69856 bp Feature: gene Location: 70159-71844 bp Ori: CRN68704.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 70216-70456 bp Feature: domain Description: RVT_N Location: 702 16-70456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70504-71140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70504-71140 bp Feature: domain Description: GIIM Note: maturase Location: 71194-71425 bp Feature: domain Description: GIIM Note: maturase Location: 71194-7142 5 bp Feature: domain Description: HNH Note: nucleases Location: 71677-71815 bp Feature: domain Description: HNH Note: nucleases Location: 71677-71815 bp Feature: gene Location: 72925-76662 bp Ori: CRN68728.1 Gene: cph2_1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 73033-73690 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 73033-73690 bp Feature: domain Description: PRK09776 Location: 73903-74374 bp Feature: domain Description: PRK09776 Location: 73903-74374 bp Feature: domain Description: PAS Location: 74431-74956 bp Feature: domain Description: PAS Location: 74431-74956 bp Feature: domain Description: PRK10060 Location: 74968-76612 bp Feature: domain Description: PRK10060 Location: 74968-76612 bp Feature: gene Location: 76769-78622 bp Ori: CRN68749.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 76781-78620 bp Feature: domain Description: PRK05658 Location: 76781-7862 0 bp Feature: gene Location: 94878-96170 bp Ori: CRN69198.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 94968-96162 bp Feature: domain Description: PRK10770 Location: 94968-96162 bp Feature: gene Location: 96151-98922 bp Ori: CRN69224.1 Gene: lptD Feature: domain Description: LptD Location: 96346-98908 bp Feature: domain Description: LptD Location: 96346-98908 bp Feature: gene Location: 99055-100365 bp Ori: CRN69249.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99058-99634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99058-99634 bp Feature: domain Description: YkfC Location: 99844-99997 bp Feature: domain Description: YkfC Location: 99844-99997 bp Feature: domain Description: HNH Note: nucleases Location: 100171-100309 bp Feature: domain Description: HNH Note: nucleases Location: 100171-100309 bp Feature: gene Location: 101609-101743 bp Feature: gene Location: 102040-103056 bp Ori: CRN69288.1 Feature: domain Description: COG3178 Location: 102043-103042 bp Feature: domain Description: COG3178 Location: 102 043-103042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVVN01000211.1 Pseudomonas aeruginosa genome assembly P26_Wales_1_VIM_2_11_10, contig P26_Wales_1_VIM_2_11_10_contig221, whole genome shotgun sequence (19558 bp)
Overview 1 RT 1: 9390-17562 bp Neighborhood of RT #1 [9390, 17756] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 9390-11261 bp Ori: CRP76869.1 Feature: domain Description: DUF262 Location: 9438-10206 bp Feature: domain Description: DUF262 Location: 943 8-10206 bp Feature: gene Location: 11265-12128 bp Ori: CRP76900.1 Feature: domain Description: YeeA Location: 11289-11994 bp Feature: domain Description: YeeA Location: 11289-11994 bp Feature: gene Location: 13043-16063 bp Ori: CRP76931.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13538-14009 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13 53 8-14009 bp Feature: gene Location: 16060-16617 bp Feature: gene Location: 16617-17756 bp Ori: CRP76983.1 Feature: domain Description: AAA_21 Location: 16689-16758 bp Feature: domain Description: AAA_21 Location: 16689-16758 bp Feature: domain Description: AAA_21 Location: 17232-17562 bp Feature: domain Description: AAA_21 Location: 1723 2-17562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVVN01000177.1 Pseudomonas aeruginosa genome assembly P26_Wales_1_VIM_2_11_10, contig P26_Wales_1_VIM_2_11_10_contig187, whole genome shotgun sequence (43894 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRP32618.1 Gene: glnQ_4 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4 590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRP32654.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRP32689.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRP32761.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)