myRT

myRT report for GCA_001180945.1_P27_Wales_1_VIM_2_02_11

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Seq: CVVX01000077.1 Pseudomonas aeruginosa genome assembly P27_Wales_1_VIM_2_02_11, contig P27_Wales_1_VIM_2_02_11_contig77, whole genome shotgun sequence (107473 bp)
Overview 1 RT 1: 16080-21764 bp Neighborhood of RT #1 [16080, 21769] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 16080-16532 bp Feature: gene Location: 16516-16770 bp Ori: CRO25271.1 Gene: cptB Feature: domain Description: SdhE Location: 16522-16762 bp Feature: domain Description: SdhE Location: 1 6522-1 6762 bp Feature: gene Location: 16846-18165 bp Ori: CRO25307.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16849-17425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6849-1 7425 bp Feature: domain Description: YkfC Location: 17623-17779 bp Feature: domain Description: YkfC Location: 1 7623-1 7779 bp Feature: domain Description: HNH Note: nucleases Location: 17962-18100 bp Feature: domain Description: HNH Note: nucleases Location: 1 7962-1 81 00 bp Feature: gene Location: 19888-20832 bp Ori: CRO25335.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 19897-20797 bp Feature: domain Description: YgfZ Location: 1 9897-20797 bp Feature: gene Location: 20933-21769 bp Ori: CRO25369.1 Feature: domain Description: HDOD Location: 20936-21764 bp Feature: domain Description: HDOD Location: 20936-21 764 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CVVX01000001.1 Pseudomonas aeruginosa genome assembly P27_Wales_1_VIM_2_02_11, contig P27_Wales_1_VIM_2_02_11_CONTIG1, whole genome shotgun sequence (14879 bp)
Overview 1 RT 1: 1803-9114 bp Neighborhood of RT #1 [1803, 10169] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1803-2942 bp Ori: CRN89359.1 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_2 1 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_2 1 Location: 2 418-2 748 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRN89404.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: gene Location: 7431-8294 bp Ori: CRN89425.1 Feature: domain Description: YeeA Location: 7455-8160 bp Feature: domain Description: YeeA Location: 7455-8160 bp Feature: gene Location: 8298-10169 bp Ori: CRN89457.1 Feature: domain Description: DUF262 Location: 8346-9114 bp Feature: domain Description: DUF2 62 Location: 8346-9114 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CVVX01000245.1 Pseudomonas aeruginosa genome assembly P27_Wales_1_VIM_2_02_11, contig P27_Wales_1_VIM_2_02_11_contig261, whole genome shotgun sequence (38186 bp)
Overview 1 RT 1: 20-5660 bp Neighborhood of RT #1 [20, 5857] DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 20-661 bp Ori: CRP63058.1 Feature: domain Description: DUF772 Location: 170-365 bp Feature: domain Description: DUF772 Location: 170-3 65 bp Feature: gene Location: 1050-2318 bp Ori: CRP63081.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263 -1920 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: gene Location: 3050-3229 bp Feature: gene Location: 4313-5857 bp Ori: CRP63133.1 Feature: domain Description: CHD Location: 4529-4943 bp Feature: domain Description: CHD Location: 4529-4943 bp Feature: domain Description: CHD Location: 5171-5660 bp Feature: domain Description: CHD Location: 5171-5660 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CVVX01000271.1 Pseudomonas aeruginosa genome assembly P27_Wales_1_VIM_2_02_11, contig P27_Wales_1_VIM_2_02_11_contig287, whole genome shotgun sequence (152982 bp)
Overview 1 RT 1: 68298-78603 bp 2 RT 2: 94861-103025 bp Neighborhood of RT #1 [68298, 78605] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [94861, 103039] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 68298-69419 bp Ori: CRP96305.1 Feature: domain Description: COG3177 Location: 68316-69408 bp Feature: domain Description: COG3177 Location: 68316-694 08 bp Feature: gene Location: 69678-69839 bp Feature: gene Location: 70142-71827 bp Ori: CRP96351.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 70199-70439 bp Feature: domain Description: RVT_N Location: 70199-704 39 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70487-71123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 704 87-71123 bp Feature: domain Description: GIIM Note: maturase Location: 71177-71408 bp Feature: domain Description: GIIM Note: maturase Location: 71177-714 08 bp Feature: domain Description: HNH Note: nucleases Location: 71660-71798 bp Feature: domain Description: HNH Note: nucleases Location: 71660-71798 bp Feature: gene Location: 72908-76645 bp Ori: CRP96367.1 Gene: cph2_8 Feature: domain Description: PBP2_BvgS_HisK_like Location: 73016-73673 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73016-73673 bp Feature: domain Description: PRK09776 Location: 73886-74357 bp Feature: domain Description: PRK09776 Location: 73886-74 357 bp Feature: domain Description: PAS Location: 74414-74939 bp Feature: domain Description: PAS Location: 74 4 14 -74 939 bp Feature: domain Description: PRK10060 Location: 74951-76595 bp Feature: domain Description: PRK10060 Location: 74 951-76595 bp Feature: gene Location: 76752-78605 bp Ori: CRP96393.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 76764-78603 bp Feature: domain Description: PRK05658 Location: 76764 -78603 bp Feature: gene Location: 94861-96153 bp Ori: CRP96800.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 94951-96145 bp Feature: domain Description: PRK10770 Location: 94 951-9614 5 bp Feature: gene Location: 96134-98905 bp Ori: CRP96820.1 Gene: lptD Feature: domain Description: LptD Location: 96329-98891 bp Feature: domain Description: LptD Location: 96329-98891 bp Feature: gene Location: 99038-100348 bp Ori: CRP96838.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99041-99617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9904 1-99617 bp Feature: domain Description: YkfC Location: 99827-99980 bp Feature: domain Description: YkfC Location: 99827-99980 bp Feature: domain Description: HNH Note: nucleases Location: 100154-100292 bp Feature: domain Description: HNH Note: nucleases Location: 100154 -100292 bp Feature: gene Location: 101592-101726 bp Feature: gene Location: 102023-103039 bp Ori: CRP96887.1 Feature: domain Description: COG3178 Location: 102026-103025 bp Feature: domain Description: COG3178 Location: 102026-103025 bp Sorry, your browser does not support inline SVG.
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