myRT

myRT report for GCA_001180965.1_P28_London_17_02_11

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Seq: CVUQ01000177.1 Pseudomonas aeruginosa genome assembly P28_London_17_02_11, contig P28_London_17_02_11_contig185, whole genome shotgun sequence (38187 bp)
Overview 1 RT 1: 20-5660 bp Neighborhood of RT #1 [20, 5857] DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 20-661 bp Ori: CRP31169.1 Feature: domain Description: DUF772 Location: 170-365 bp Feature: domain Description: DUF772 Location: 1 70-365 bp Feature: gene Location: 1050-2318 bp Ori: CRP31200.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 263-1 920 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: domain Description: GIIM Note: maturase Location: 1 998-2220 bp Feature: gene Location: 3050-3229 bp Feature: gene Location: 4313-5857 bp Ori: CRP31284.1 Feature: domain Description: CHD Location: 4529-4943 bp Feature: domain Description: CHD Location: 4529-4943 bp Feature: domain Description: CHD Location: 5171-5660 bp Feature: domain Description: CHD Location: 51 71 -5660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVUQ01000182.1 Pseudomonas aeruginosa genome assembly P28_London_17_02_11, contig P28_London_17_02_11_contig190, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRP55349.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF2 62 Location: 2 5858-2 662 6 bp Feature: gene Location: 27685-28548 bp Ori: CRP55380.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 2 7709-2 8414 bp Feature: gene Location: 29463-32483 bp Ori: CRP55417.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 9958-3042 9 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRP55504.1 Gene: recF_4 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_2 1 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_2 1 Location: 33652 -33982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVUQ01000146.1 Pseudomonas aeruginosa genome assembly P28_London_17_02_11, contig P28_London_17_02_11_contig154, whole genome shotgun sequence (88369 bp)
Overview 1 RT 1: 40834-46518 bp Neighborhood of RT #1 [40834, 46523] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40834-41286 bp Feature: gene Location: 41270-41524 bp Ori: CRN88637.1 Gene: cptB Feature: domain Description: SdhE Location: 41276-41516 bp Feature: domain Description: SdhE Location: 41276-41516 bp Feature: gene Location: 41600-42919 bp Ori: CRN88674.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41603-42179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41603 -42179 bp Feature: domain Description: YkfC Location: 42377-42533 bp Feature: domain Description: YkfC Location: 423 77-4253 3 bp Feature: domain Description: HNH Note: nucleases Location: 42716-42854 bp Feature: domain Description: HNH Note: nucleases Location: 42716-42854 bp Feature: gene Location: 44642-45586 bp Ori: CRN88713.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 44651-45551 bp Feature: domain Description: YgfZ Location: 44651-45551 bp Feature: gene Location: 45687-46523 bp Ori: CRN88755.1 Feature: domain Description: HDOD Location: 45690-46518 bp Feature: domain Description: HDOD Location: 45690-46518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CVUQ01000088.1 Pseudomonas aeruginosa genome assembly P28_London_17_02_11, contig P28_London_17_02_11_contig88, whole genome shotgun sequence (116894 bp)
Overview 1 RT 1: 32210-42515 bp 2 RT 2: 58773-66937 bp Neighborhood of RT #1 [32210, 42517] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [58773, 66951] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 32210-33331 bp Ori: CRN36847.1 Feature: domain Description: COG3177 Location: 32228-33320 bp Feature: domain Description: COG3177 Location: 32228-33320 bp Feature: gene Location: 33590-33751 bp Feature: gene Location: 34054-35739 bp Ori: CRN36868.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 34111-34351 bp Feature: domain Description: RVT_N Location: 34 111-34 351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34399-35035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 399-35035 bp Feature: domain Description: GIIM Note: maturase Location: 35089-35320 bp Feature: domain Description: GIIM Note: maturase Location: 35089-35320 bp Feature: domain Description: HNH Note: nucleases Location: 35572-35710 bp Feature: domain Description: HNH Note: nucleases Location: 35572-35710 bp Feature: gene Location: 36820-40557 bp Ori: CRN36879.1 Gene: cph2_3 Feature: domain Description: PBP2_BvgS_HisK_like Location: 36928-37585 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 36928-37585 bp Feature: domain Description: PRK09776 Location: 37798-38269 bp Feature: domain Description: PRK09776 Location: 37798-38269 bp Feature: domain Description: PAS Location: 38326-38851 bp Feature: domain Description: PAS Location: 38326-38851 bp Feature: domain Description: PRK10060 Location: 38863-40507 bp Feature: domain Description: PRK10060 Location: 38863-4 0507 bp Feature: gene Location: 40664-42517 bp Ori: CRN36889.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 40676-42515 bp Feature: domain Description: PRK05658 Location: 4 0676-4 2515 bp Feature: gene Location: 58773-60065 bp Ori: CRN37255.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 58863-60057 bp Feature: domain Description: PRK10770 Location: 58863-60057 bp Feature: gene Location: 60046-62817 bp Ori: CRN37306.1 Gene: lptD Feature: domain Description: LptD Location: 60241-62803 bp Feature: domain Description: LptD Location: 6024 1-62803 bp Feature: gene Location: 62950-64260 bp Ori: CRN37317.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62953-63529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62953-63529 bp Feature: domain Description: YkfC Location: 63739-63892 bp Feature: domain Description: YkfC Location: 63739-63892 bp Feature: domain Description: HNH Note: nucleases Location: 64066-64204 bp Feature: domain Description: HNH Note: nucleases Location: 64 066-64 204 bp Feature: gene Location: 65504-65638 bp Feature: gene Location: 65935-66951 bp Ori: CRN37340.1 Feature: domain Description: COG3178 Location: 65938-66937 bp Feature: domain Description: COG3178 Location: 65938-66937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )