myRT

myRT report for GCA_001180985.1_P29_London_12_VIM_2_05_11

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Seq: CVVO01000011.1 Pseudomonas aeruginosa genome assembly P29_London_12_VIM_2_05_11, contig P29_London_12_VIM_2_05_11_contig11, whole genome shotgun sequence (141371 bp)
Overview 1 RT 1: 42672-48361 bp Neighborhood of RT #1 [42672, 48361] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 42672-43508 bp Ori: CRN69670.1 Feature: domain Description: HDOD Location: 42675-43503 bp Feature: domain Description: HDOD Location: 42675-43503 bp Feature: gene Location: 43609-44553 bp Ori: CRN69691.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 43618-44518 bp Feature: domain Description: YgfZ Location: 4361 8-4451 8 bp Feature: gene Location: 46276-47595 bp Ori: CRN69714.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46279-46855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46279-46855 bp Feature: domain Description: YkfC Location: 47053-47209 bp Feature: domain Description: YkfC Location: 47053-47209 bp Feature: domain Description: HNH Note: nucleases Location: 47392-47530 bp Feature: domain Description: HNH Note: nucleases Location: 47392-47530 bp Feature: gene Location: 47671-47925 bp Ori: CRN69741.1 Gene: cptB Feature: domain Description: SdhE Location: 47677-47917 bp Feature: domain Description: SdhE Location: 47677-4791 7 bp Feature: gene Location: 47909-48361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVVO01000022.1 Pseudomonas aeruginosa genome assembly P29_London_12_VIM_2_05_11, contig P29_London_12_VIM_2_05_11_contig22, whole genome shotgun sequence (141299 bp)
Overview 1 RT 1: 56615-66920 bp 2 RT 2: 83178-91342 bp Neighborhood of RT #1 [56615, 66922] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [83178, 91356] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 56615-57736 bp Ori: CRN75503.1 Feature: domain Description: COG3177 Location: 56633-57725 bp Feature: domain Description: COG3177 Location: 56633-5772 5 bp Feature: gene Location: 57995-58156 bp Feature: gene Location: 58459-60144 bp Ori: CRN75555.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 58516-58756 bp Feature: domain Description: RVT_N Location: 58516-58756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58804-59440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58804-59440 bp Feature: domain Description: GIIM Note: maturase Location: 59494-59725 bp Feature: domain Description: GIIM Note: maturase Location: 59494-5972 5 bp Feature: domain Description: HNH Note: nucleases Location: 59977-60115 bp Feature: domain Description: HNH Note: nucleases Location: 59977-60115 bp Feature: gene Location: 61225-64962 bp Ori: CRN75576.1 Gene: cph2_2 Feature: domain Description: PBP2_BvgS_HisK_like Location: 61333-61990 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 61333-61990 bp Feature: domain Description: PRK09776 Location: 62203-62674 bp Feature: domain Description: PRK09776 Location: 62 2 03-62 674 bp Feature: domain Description: PAS Location: 62731-63256 bp Feature: domain Description: PAS Location: 62 731-632 56 bp Feature: domain Description: PRK10060 Location: 63268-64912 bp Feature: domain Description: PRK10060 Location: 632 68-64912 bp Feature: gene Location: 65069-66922 bp Ori: CRN75601.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 65081-66920 bp Feature: domain Description: PRK05658 Location: 65081-6692 0 bp Feature: gene Location: 83178-84470 bp Ori: CRN76018.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 83268-84462 bp Feature: domain Description: PRK10770 Location: 832 68-84462 bp Feature: gene Location: 84451-87222 bp Ori: CRN76043.1 Gene: lptD Feature: domain Description: LptD Location: 84646-87208 bp Feature: domain Description: LptD Location: 84646-872 08 bp Feature: gene Location: 87355-88665 bp Ori: CRN76066.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87358-87934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87358-87934 bp Feature: domain Description: YkfC Location: 88144-88297 bp Feature: domain Description: YkfC Location: 88144-882 97 bp Feature: domain Description: HNH Note: nucleases Location: 88471-88609 bp Feature: domain Description: HNH Note: nucleases Location: 88471-88609 bp Feature: gene Location: 89909-90043 bp Feature: gene Location: 90340-91356 bp Ori: CRN76107.1 Feature: domain Description: COG3178 Location: 90343-91342 bp Feature: domain Description: COG3178 Location: 90343-91342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVVO01000189.1 Pseudomonas aeruginosa genome assembly P29_London_12_VIM_2_05_11, contig P29_London_12_VIM_2_05_11_contig201, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 1803-9114 bp Neighborhood of RT #1 [1803, 10169] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1803-2942 bp Ori: CRP45689.1 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRP45730.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 991-4462 bp Feature: gene Location: 7431-8294 bp Ori: CRP45755.1 Feature: domain Description: YeeA Location: 7455-8160 bp Feature: domain Description: YeeA Location: 7455-8160 bp Feature: gene Location: 8298-10169 bp Ori: CRP45791.1 Feature: domain Description: DUF262 Location: 8346-9114 bp Feature: domain Description: DUF262 Location: 83 46-9114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: CVVO01000180.1 Pseudomonas aeruginosa genome assembly P29_London_12_VIM_2_05_11, contig P29_London_12_VIM_2_05_11_contig192, whole genome shotgun sequence (43896 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRP29941.1 Gene: glnQ_4 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4 590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRP29973.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRP30006.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRP30059.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)