myRT

myRT report for GCA_001181025.1_P31_Wales_1_VIM_2_11_11

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Seq: CVVS01000033.1 Pseudomonas aeruginosa genome assembly P31_Wales_1_VIM_2_11_11, contig P31_Wales_1_VIM_2_11_11_contig33, whole genome shotgun sequence (132238 bp)
Overview 1 RT 1: 40845-46529 bp Neighborhood of RT #1 [40845, 46534] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40845-41297 bp Feature: gene Location: 41281-41535 bp Ori: CRO11548.1 Gene: cptB Feature: domain Description: SdhE Location: 41287-41527 bp Feature: domain Description: SdhE Location: 41 287-41 527 bp Feature: gene Location: 41611-42930 bp Ori: CRO11581.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41614-42190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 61 4-421 90 bp Feature: domain Description: YkfC Location: 42388-42544 bp Feature: domain Description: YkfC Location: 42388-42544 bp Feature: domain Description: HNH Note: nucleases Location: 42727-42865 bp Feature: domain Description: HNH Note: nucleases Location: 42727-42865 bp Feature: gene Location: 44653-45597 bp Ori: CRO11613.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 44662-45562 bp Feature: domain Description: YgfZ Location: 44662-45562 bp Feature: gene Location: 45698-46534 bp Ori: CRO11648.1 Feature: domain Description: HDOD Location: 45701-46529 bp Feature: domain Description: HDOD Location: 45701 -46529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CVVS01000305.1 Pseudomonas aeruginosa genome assembly P31_Wales_1_VIM_2_11_11, contig P31_Wales_1_VIM_2_11_11_contig321, whole genome shotgun sequence (19558 bp)
Overview 1 RT 1: 9390-17562 bp Neighborhood of RT #1 [9390, 17756] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 9390-11261 bp Ori: CRQ53478.1 Feature: domain Description: DUF262 Location: 9438-10206 bp Feature: domain Description: DUF2 62 Location: 9438-102 06 bp Feature: gene Location: 11265-12128 bp Ori: CRQ53494.1 Feature: domain Description: YeeA Location: 11289-11994 bp Feature: domain Description: YeeA Location: 112 89-11994 bp Feature: gene Location: 13043-16063 bp Ori: CRQ53502.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13538-14009 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13538-14009 bp Feature: gene Location: 16060-16617 bp Feature: gene Location: 16617-17756 bp Ori: CRQ53533.1 Feature: domain Description: AAA_21 Location: 16689-16758 bp Feature: domain Description: AAA_2 1 Location: 16689-16758 bp Feature: domain Description: AAA_21 Location: 17232-17562 bp Feature: domain Description: AAA_2 1 Location: 172 32 -17562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVVS01000066.1 Pseudomonas aeruginosa genome assembly P31_Wales_1_VIM_2_11_11, contig P31_Wales_1_VIM_2_11_11_contig66, whole genome shotgun sequence (104122 bp)
Overview 1 RT 1: 19438-29743 bp 2 RT 2: 46001-54165 bp Neighborhood of RT #1 [19438, 29745] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [46001, 54179] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 19438-20559 bp Ori: CRO33832.1 Feature: domain Description: COG3177 Location: 19456-20548 bp Feature: domain Description: COG3 177 Location: 19456-20548 bp Feature: gene Location: 20818-20979 bp Feature: gene Location: 21282-22967 bp Ori: CRO33963.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 21339-21579 bp Feature: domain Description: RVT_N Location: 213 3 9-21579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21627-22263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21627-22263 bp Feature: domain Description: GIIM Note: maturase Location: 22317-22548 bp Feature: domain Description: GIIM Note: maturase Location: 223 17-22548 bp Feature: domain Description: HNH Note: nucleases Location: 22800-22938 bp Feature: domain Description: HNH Note: nucleases Location: 22800-2293 8 bp Feature: gene Location: 24048-27785 bp Ori: CRO33998.1 Gene: cph2_2 Feature: domain Description: PBP2_BvgS_HisK_like Location: 24156-24813 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 24156-24813 bp Feature: domain Description: PRK09776 Location: 25026-25497 bp Feature: domain Description: PRK09776 Location: 25026-25497 bp Feature: domain Description: PAS Location: 25554-26079 bp Feature: domain Description: PAS Location: 25554-26079 bp Feature: domain Description: PRK10060 Location: 26091-27735 bp Feature: domain Description: PRK10060 Location: 26091-2773 5 bp Feature: gene Location: 27892-29745 bp Ori: CRO34031.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 27904-29743 bp Feature: domain Description: PRK05658 Location: 27904-29743 bp Feature: gene Location: 46001-47293 bp Ori: CRO34889.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 46091-47285 bp Feature: domain Description: PRK10770 Location: 46091-47285 bp Feature: gene Location: 47274-50045 bp Ori: CRO34922.1 Gene: lptD Feature: domain Description: LptD Location: 47469-50031 bp Feature: domain Description: LptD Location: 47469-5003 1 bp Feature: gene Location: 50178-51488 bp Ori: CRO34953.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50181-50757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50181-50757 bp Feature: domain Description: YkfC Location: 50967-51120 bp Feature: domain Description: YkfC Location: 50967-51120 bp Feature: domain Description: HNH Note: nucleases Location: 51294-51432 bp Feature: domain Description: HNH Note: nucleases Location: 51294-5143 2 bp Feature: gene Location: 52732-52866 bp Feature: gene Location: 53163-54179 bp Ori: CRO35020.1 Feature: domain Description: COG3178 Location: 53166-54165 bp Feature: domain Description: COG3 178 Location: 53 166-54165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVVS01000273.1 Pseudomonas aeruginosa genome assembly P31_Wales_1_VIM_2_11_11, contig P31_Wales_1_VIM_2_11_11_contig289, whole genome shotgun sequence (43893 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRQ32003.1 Gene: glnQ_5 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4 590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRQ32022.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRQ32039.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRQ32072.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)