myRT

myRT report for GCA_001181045.1_P32_London_17_VIM_2_10_11

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Seq: CVVJ01000022.1 Pseudomonas aeruginosa genome assembly P32_London_17_VIM_2_10_11, contig P32_London_17_VIM_2_10_11_contig22, whole genome shotgun sequence (141720 bp)
Overview 1 RT 1: 43023-48712 bp Neighborhood of RT #1 [43023, 48712] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 43023-43859 bp Ori: CRN64097.1 Feature: domain Description: HDOD Location: 43026-43854 bp Feature: domain Description: HDOD Location: 43026-43854 bp Feature: gene Location: 43960-44904 bp Ori: CRN64113.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 43969-44869 bp Feature: domain Description: YgfZ Location: 43969-44869 bp Feature: gene Location: 46627-47946 bp Ori: CRN64131.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46630-47206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46630-47206 bp Feature: domain Description: YkfC Location: 47404-47560 bp Feature: domain Description: YkfC Location: 47404-47560 bp Feature: domain Description: HNH Note: nucleases Location: 47743-47881 bp Feature: domain Description: HNH Note: nucleases Location: 47743-47881 bp Feature: gene Location: 48022-48276 bp Ori: CRN64151.1 Gene: cptB Feature: domain Description: SdhE Location: 48028-48268 bp Feature: domain Description: SdhE Location: 48028-48268 bp Feature: gene Location: 48260-48712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVVJ01000151.1 Pseudomonas aeruginosa genome assembly P32_London_17_VIM_2_10_11, contig P32_London_17_VIM_2_10_11_contig165, whole genome shotgun sequence (43892 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRP57324.1 Gene: glnQ_5 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRP57353.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRP57384.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRP57441.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 102 39-10653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVVJ01000123.1 Pseudomonas aeruginosa genome assembly P32_London_17_VIM_2_10_11, contig P32_London_17_VIM_2_10_11_contig137, whole genome shotgun sequence (281932 bp)
Overview 1 RT 1: 49944-58114 bp 2 RT 2: 74378-84674 bp Neighborhood of RT #1 [49944, 58122] COG3178 RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74378, 84685] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 49944-50960 bp Ori: CRO64189.1 Feature: domain Description: COG3178 Location: 49947-50946 bp Feature: domain Description: COG3 178 Location: 49947-50946 bp Feature: gene Location: 51257-51391 bp Feature: gene Location: 52635-53945 bp Ori: CRO64245.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52638-53214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5263 8-53 214 bp Feature: domain Description: YkfC Location: 53424-53577 bp Feature: domain Description: YkfC Location: 53 424-53 577 bp Feature: domain Description: HNH Note: nucleases Location: 53751-53889 bp Feature: domain Description: HNH Note: nucleases Location: 53 751-53 889 bp Feature: gene Location: 54078-56849 bp Ori: CRO64272.1 Gene: lptD Feature: domain Description: LptD Location: 54273-56835 bp Feature: domain Description: LptD Location: 54273 -5683 5 bp Feature: gene Location: 56830-58122 bp Ori: CRO64340.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 56920-58114 bp Feature: domain Description: PRK10770 Location: 56920-58114 bp Feature: gene Location: 74378-76231 bp Ori: CRO65074.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 74390-76229 bp Feature: domain Description: PRK05658 Location: 743 90-76229 bp Feature: gene Location: 76338-80075 bp Ori: CRO65103.1 Gene: cph2_5 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76446-77103 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76446-77103 bp Feature: domain Description: PRK09776 Location: 77316-77787 bp Feature: domain Description: PRK09776 Location: 773 16-77787 bp Feature: domain Description: PAS Location: 77844-78369 bp Feature: domain Description: PAS Location: 77844-783 69 bp Feature: domain Description: PRK10060 Location: 78381-80025 bp Feature: domain Description: PRK10060 Location: 783 81-80025 bp Feature: gene Location: 81156-82841 bp Ori: CRO65147.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 81213-81453 bp Feature: domain Description: RVT_N Location: 81213 -81453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81501-82137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81501-8213 7 bp Feature: domain Description: GIIM Note: maturase Location: 82191-82422 bp Feature: domain Description: GIIM Note: maturase Location: 82191-82422 bp Feature: domain Description: HNH Note: nucleases Location: 82674-82812 bp Feature: domain Description: HNH Note: nucleases Location: 82674-82812 bp Feature: gene Location: 83144-83305 bp Feature: gene Location: 83564-84685 bp Ori: CRO65220.1 Feature: domain Description: COG3177 Location: 83582-84674 bp Feature: domain Description: COG3 177 Location: 83 582-84674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: CVVJ01000160.1 Pseudomonas aeruginosa genome assembly P32_London_17_VIM_2_10_11, contig P32_London_17_VIM_2_10_11_contig174, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 1803-9114 bp Neighborhood of RT #1 [1803, 10169] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1803-2942 bp Ori: CRP80167.1 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 1875-194 4 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_21 Location: 24 18-274 8 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRP80221.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4 4 62 bp Feature: gene Location: 7431-8294 bp Ori: CRP80247.1 Feature: domain Description: YeeA Location: 7455-8160 bp Feature: domain Description: YeeA Location: 74 55-8160 bp Feature: gene Location: 8298-10169 bp Ori: CRP80272.1 Feature: domain Description: DUF262 Location: 8346-9114 bp Feature: domain Description: DUF262 Location: 834 6-9114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)