myRT

myRT report for GCA_001181105.1_P35_London_26_VIM_2_05_12

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Seq: CVUS01000178.1 Pseudomonas aeruginosa genome assembly P35_London_26_VIM_2_05_12, contig P35_London_26_VIM_2_05_12_contig201, whole genome shotgun sequence (43910 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRO92939.1 Gene: glnQ_4 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRO93000.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRO93033.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRO93106.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 1 0239-1 0653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 1 0881 -1 1 370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVUS01000141.1 Pseudomonas aeruginosa genome assembly P35_London_26_VIM_2_05_12, contig P35_London_26_VIM_2_05_12_contig144, whole genome shotgun sequence (89089 bp)
Overview 1 RT 1: 40729-46413 bp Neighborhood of RT #1 [40729, 46418] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40729-41181 bp Feature: gene Location: 41165-41419 bp Ori: CRN75300.1 Gene: cptB Feature: domain Description: SdhE Location: 41171-41411 bp Feature: domain Description: SdhE Location: 41171-41411 bp Feature: gene Location: 41495-42814 bp Ori: CRN75333.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41498-42074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41498-42 074 bp Feature: domain Description: YkfC Location: 42272-42428 bp Feature: domain Description: YkfC Location: 42 2 72 -42 42 8 bp Feature: domain Description: HNH Note: nucleases Location: 42611-42749 bp Feature: domain Description: HNH Note: nucleases Location: 42 611-42 749 bp Feature: gene Location: 44537-45481 bp Ori: CRN75359.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 44546-45446 bp Feature: domain Description: YgfZ Location: 44546-45446 bp Feature: gene Location: 45582-46418 bp Ori: CRN75392.1 Feature: domain Description: HDOD Location: 45585-46413 bp Feature: domain Description: HDOD Location: 45585-46413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CVUS01000077.1 Pseudomonas aeruginosa genome assembly P35_London_26_VIM_2_05_12, contig P35_London_26_VIM_2_05_12_contig77, whole genome shotgun sequence (94688 bp)
Overview 1 RT 1: 10004-20309 bp 2 RT 2: 36567-44731 bp Neighborhood of RT #1 [10004, 20311] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [36567, 44745] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 10004-11125 bp Ori: CRN47712.1 Feature: domain Description: COG3177 Location: 10022-11114 bp Feature: domain Description: COG3 177 Location: 10022-11114 bp Feature: gene Location: 11384-11545 bp Feature: gene Location: 11848-13533 bp Ori: CRN47749.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 11905-12145 bp Feature: domain Description: RVT_N Location: 11905-12145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12193-12829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12193 -12829 bp Feature: domain Description: GIIM Note: maturase Location: 12883-13114 bp Feature: domain Description: GIIM Note: maturase Location: 12883 -13 114 bp Feature: domain Description: HNH Note: nucleases Location: 13366-13504 bp Feature: domain Description: HNH Note: nucleases Location: 13 3 66-13 504 bp Feature: gene Location: 14614-18351 bp Ori: CRN47762.1 Gene: cph2_2 Feature: domain Description: PBP2_BvgS_HisK_like Location: 14722-15379 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 14722-153 79 bp Feature: domain Description: PRK09776 Location: 15592-16063 bp Feature: domain Description: PRK09776 Location: 15592-16063 bp Feature: domain Description: PAS Location: 16120-16645 bp Feature: domain Description: PAS Location: 16120-16645 bp Feature: domain Description: PRK10060 Location: 16657-18301 bp Feature: domain Description: PRK10060 Location: 16657-183 01 bp Feature: gene Location: 18458-20311 bp Ori: CRN47778.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 18470-20309 bp Feature: domain Description: PRK05658 Location: 18470-203 09 bp Feature: gene Location: 36567-37859 bp Ori: CRN48095.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 36657-37851 bp Feature: domain Description: PRK10770 Location: 3 6657-3 7851 bp Feature: gene Location: 37840-40611 bp Ori: CRN48115.1 Gene: lptD Feature: domain Description: LptD Location: 38035-40597 bp Feature: domain Description: LptD Location: 3 803 5-40597 bp Feature: gene Location: 40744-42054 bp Ori: CRN48132.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40747-41323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40747-413 23 bp Feature: domain Description: YkfC Location: 41533-41686 bp Feature: domain Description: YkfC Location: 4153 3 -41686 bp Feature: domain Description: HNH Note: nucleases Location: 41860-41998 bp Feature: domain Description: HNH Note: nucleases Location: 41860-41998 bp Feature: gene Location: 43298-43432 bp Feature: gene Location: 43729-44745 bp Ori: CRN48166.1 Feature: domain Description: COG3178 Location: 43732-44731 bp Feature: domain Description: COG3 178 Location: 43 73 2-4473 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVUS01000188.1 Pseudomonas aeruginosa genome assembly P35_London_26_VIM_2_05_12, contig P35_London_26_VIM_2_05_12_contig211, whole genome shotgun sequence (36026 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRP18133.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRP18172.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-284 14 bp Feature: gene Location: 29463-32483 bp Ori: CRP18203.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-304 29 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRP18266.1 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)