myRT

myRT report for GCA_001181145.1_P37_London_28_VIM_2_07_12

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Seq: CVUJ01000117.1 Pseudomonas aeruginosa genome assembly P37_London_28_VIM_2_07_12, contig P37_London_28_VIM_2_07_12_contig126, whole genome shotgun sequence (88369 bp)
Overview 1 RT 1: 40834-46518 bp Neighborhood of RT #1 [40834, 46523] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40834-41286 bp Feature: gene Location: 41270-41524 bp Ori: CRN35737.1 Gene: cptB Feature: domain Description: SdhE Location: 41276-41516 bp Feature: domain Description: SdhE Location: 41 276-41 51 6 bp Feature: gene Location: 41600-42919 bp Ori: CRN35744.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41603-42179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 603-421 79 bp Feature: domain Description: YkfC Location: 42377-42533 bp Feature: domain Description: YkfC Location: 42377-42533 bp Feature: domain Description: HNH Note: nucleases Location: 42716-42854 bp Feature: domain Description: HNH Note: nucleases Location: 4271 6-42854 bp Feature: gene Location: 44642-45586 bp Ori: CRN35753.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 44651-45551 bp Feature: domain Description: YgfZ Location: 44651 -45551 bp Feature: gene Location: 45687-46523 bp Ori: CRN35762.1 Feature: domain Description: HDOD Location: 45690-46518 bp Feature: domain Description: HDOD Location: 45690-4651 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CVUJ01000144.1 Pseudomonas aeruginosa genome assembly P37_London_28_VIM_2_07_12, contig P37_London_28_VIM_2_07_12_contig153, whole genome shotgun sequence (43894 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRN80088.1 Gene: glnQ_4 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRN80118.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRN80144.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRN80209.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 102 39-10653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVUJ01000152.1 Pseudomonas aeruginosa genome assembly P37_London_28_VIM_2_07_12, contig P37_London_28_VIM_2_07_12_contig161, whole genome shotgun sequence (36026 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRO00422.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRO00450.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-28414 bp Feature: gene Location: 29463-32483 bp Ori: CRO00476.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-3 0429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRO00530.1 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 3 3 109-3 3 178 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 3 3 652-3 3 982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVUJ01000022.1 Pseudomonas aeruginosa genome assembly P37_London_28_VIM_2_07_12, contig P37_London_28_VIM_2_07_12_contig22, whole genome shotgun sequence (145771 bp)
Overview 1 RT 1: 56649-66954 bp 2 RT 2: 83212-91376 bp Neighborhood of RT #1 [56649, 66956] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [83212, 91390] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 56649-57770 bp Ori: CRN14673.1 Feature: domain Description: COG3177 Location: 56667-57759 bp Feature: domain Description: COG3177 Location: 56667-57759 bp Feature: gene Location: 58029-58190 bp Feature: gene Location: 58493-60178 bp Ori: CRN14677.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 58550-58790 bp Feature: domain Description: RVT_N Location: 58550-58790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58838-59474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58838-594 74 bp Feature: domain Description: GIIM Note: maturase Location: 59528-59759 bp Feature: domain Description: GIIM Note: maturase Location: 59528-59759 bp Feature: domain Description: HNH Note: nucleases Location: 60011-60149 bp Feature: domain Description: HNH Note: nucleases Location: 60011-6014 9 bp Feature: gene Location: 61259-64996 bp Ori: CRN14679.1 Gene: cph2_1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 61367-62024 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61367-62024 bp Feature: domain Description: PRK09776 Location: 62237-62708 bp Feature: domain Description: PRK09776 Location: 62237-62708 bp Feature: domain Description: PAS Location: 62765-63290 bp Feature: domain Description: PAS Location: 62765-63290 bp Feature: domain Description: PRK10060 Location: 63302-64946 bp Feature: domain Description: PRK10060 Location: 63302-64 94 6 bp Feature: gene Location: 65103-66956 bp Ori: CRN14680.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 65115-66954 bp Feature: domain Description: PRK05658 Location: 65115-66954 bp Feature: gene Location: 83212-84504 bp Ori: CRN14709.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 83302-84496 bp Feature: domain Description: PRK10770 Location: 83302-84 4 96 bp Feature: gene Location: 84485-87256 bp Ori: CRN14712.1 Gene: lptD Feature: domain Description: LptD Location: 84680-87242 bp Feature: domain Description: LptD Location: 84 680-8724 2 bp Feature: gene Location: 87389-88699 bp Ori: CRN14715.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87392-87968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87392-87968 bp Feature: domain Description: YkfC Location: 88178-88331 bp Feature: domain Description: YkfC Location: 88178-88331 bp Feature: domain Description: HNH Note: nucleases Location: 88505-88643 bp Feature: domain Description: HNH Note: nucleases Location: 88505-8864 3 bp Feature: gene Location: 89943-90077 bp Feature: gene Location: 90374-91390 bp Ori: CRN14720.1 Feature: domain Description: COG3178 Location: 90377-91376 bp Feature: domain Description: COG3178 Location: 90377-91376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )