myRT

myRT report for GCA_001181165.1_P38_London_12_VIM_2_08_12

Download annotations/find similar RTs

Seq: CVUT01000033.1 Pseudomonas aeruginosa genome assembly P38_London_12_VIM_2_08_12, contig P38_London_12_VIM_2_08_12_contig33, whole genome shotgun sequence (141369 bp)
Overview 1 RT 1: 42672-48361 bp Neighborhood of RT #1 [42672, 48361] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 42672-43508 bp Ori: CRN24424.1 Feature: domain Description: HDOD Location: 42675-43503 bp Feature: domain Description: HDOD Location: 42675-43503 bp Feature: gene Location: 43609-44553 bp Ori: CRN24433.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 43618-44518 bp Feature: domain Description: YgfZ Location: 4361 8-4451 8 bp Feature: gene Location: 46276-47595 bp Ori: CRN24443.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46279-46855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46279-46855 bp Feature: domain Description: YkfC Location: 47053-47209 bp Feature: domain Description: YkfC Location: 47053-47209 bp Feature: domain Description: HNH Note: nucleases Location: 47392-47530 bp Feature: domain Description: HNH Note: nucleases Location: 47392-47530 bp Feature: gene Location: 47671-47925 bp Ori: CRN24453.1 Gene: cptB Feature: domain Description: SdhE Location: 47677-47917 bp Feature: domain Description: SdhE Location: 47677-4791 7 bp Feature: gene Location: 47909-48361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVUT01000158.1 Pseudomonas aeruginosa genome assembly P38_London_12_VIM_2_08_12, contig P38_London_12_VIM_2_08_12_contig177, whole genome shotgun sequence (43896 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRO87589.1 Gene: glnQ_5 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRO87630.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRO87672.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRO87743.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 102 39-10653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVUT01000161.1 Pseudomonas aeruginosa genome assembly P38_London_12_VIM_2_08_12, contig P38_London_12_VIM_2_08_12_contig180, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRO92893.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRO92946.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-28414 bp Feature: gene Location: 29463-32483 bp Ori: CRO93038.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-3 0429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRO93105.1 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 3 3 109-3 3 178 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 3 3 652-3 3 982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVUT01000120.1 Pseudomonas aeruginosa genome assembly P38_London_12_VIM_2_08_12, contig P38_London_12_VIM_2_08_12_contig139, whole genome shotgun sequence (104112 bp)
Overview 1 RT 1: 19428-29733 bp 2 RT 2: 45991-54155 bp Neighborhood of RT #1 [19428, 29735] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [45991, 54169] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 19428-20549 bp Ori: CRN57054.1 Feature: domain Description: COG3177 Location: 19446-20538 bp Feature: domain Description: COG3177 Location: 194 4 6-20538 bp Feature: gene Location: 20808-20969 bp Feature: gene Location: 21272-22957 bp Ori: CRN57095.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 21329-21569 bp Feature: domain Description: RVT_N Location: 21329-21569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21617-22253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21617-22253 bp Feature: domain Description: GIIM Note: maturase Location: 22307-22538 bp Feature: domain Description: GIIM Note: maturase Location: 22307-22538 bp Feature: domain Description: HNH Note: nucleases Location: 22790-22928 bp Feature: domain Description: HNH Note: nucleases Location: 22790-22928 bp Feature: gene Location: 24038-27775 bp Ori: CRN57114.1 Gene: cph2_4 Feature: domain Description: PBP2_BvgS_HisK_like Location: 24146-24803 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 24 14 6-24 803 bp Feature: domain Description: PRK09776 Location: 25016-25487 bp Feature: domain Description: PRK09776 Location: 25016-254 87 bp Feature: domain Description: PAS Location: 25544-26069 bp Feature: domain Description: PAS Location: 2554 4 -26069 bp Feature: domain Description: PRK10060 Location: 26081-27725 bp Feature: domain Description: PRK10060 Location: 26081-27725 bp Feature: gene Location: 27882-29735 bp Ori: CRN57130.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 27894-29733 bp Feature: domain Description: PRK05658 Location: 27894 -29733 bp Feature: gene Location: 45991-47283 bp Ori: CRN57494.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 46081-47275 bp Feature: domain Description: PRK10770 Location: 4 6081-4 7275 bp Feature: gene Location: 47264-50035 bp Ori: CRN57517.1 Gene: lptD Feature: domain Description: LptD Location: 47459-50021 bp Feature: domain Description: LptD Location: 4 74 59-50021 bp Feature: gene Location: 50168-51478 bp Ori: CRN57531.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50171-50747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50171-5074 7 bp Feature: domain Description: YkfC Location: 50957-51110 bp Feature: domain Description: YkfC Location: 50957-51110 bp Feature: domain Description: HNH Note: nucleases Location: 51284-51422 bp Feature: domain Description: HNH Note: nucleases Location: 51284 -514 22 bp Feature: gene Location: 52722-52856 bp Feature: gene Location: 53153-54169 bp Ori: CRN57563.1 Feature: domain Description: COG3178 Location: 53156-54155 bp Feature: domain Description: COG3178 Location: 53156-54 155 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )