myRT

myRT report for GCA_001181185.1_P39_London_29_08_12

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Seq: CVVC01000131.1 Pseudomonas aeruginosa genome assembly P39_London_29_08_12, contig P39_London_29_08_12_contig140, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRP50981.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRP51014.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-2841 4 bp Feature: gene Location: 29463-32483 bp Ori: CRP51049.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRP51140.1 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 331 09-331 78 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVVC01000126.1 Pseudomonas aeruginosa genome assembly P39_London_29_08_12, contig P39_London_29_08_12_contig135, whole genome shotgun sequence (43896 bp)
Overview 1 RT 1: 4561-11371 bp Neighborhood of RT #1 [4561, 11568] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4561-5388 bp Ori: CRP39659.1 Gene: glnQ_5 Feature: domain Description: ABC_phnC Location: 4591-5305 bp Feature: domain Description: ABC_phnC Location: 4591-5305 bp Feature: gene Location: 5731-6372 bp Ori: CRP39719.1 Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: gene Location: 6761-8029 bp Ori: CRP39777.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: gene Location: 8761-8940 bp Feature: gene Location: 10024-11568 bp Ori: CRP39871.1 Feature: domain Description: CHD Location: 10240-10654 bp Feature: domain Description: CHD Location: 102 40-10654 bp Feature: domain Description: CHD Location: 10882-11371 bp Feature: domain Description: CHD Location: 10882 -11371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVVC01000101.1 Pseudomonas aeruginosa genome assembly P39_London_29_08_12, contig P39_London_29_08_12_contig110, whole genome shotgun sequence (311452 bp)
Overview 1 RT 1: 49991-58161 bp 2 RT 2: 74425-84760 bp Neighborhood of RT #1 [49991, 58169] COG3178 RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74425, 84760] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH HTH_XRE Feature: gene Location: 49991-51007 bp Ori: CRO44502.1 Feature: domain Description: COG3178 Location: 49994-50993 bp Feature: domain Description: COG3 178 Location: 49994-50993 bp Feature: gene Location: 51304-51438 bp Feature: gene Location: 52682-53992 bp Ori: CRO44582.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52685-53261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52685-53 261 bp Feature: domain Description: YkfC Location: 53471-53624 bp Feature: domain Description: YkfC Location: 53 471-53 624 bp Feature: domain Description: HNH Note: nucleases Location: 53798-53936 bp Feature: domain Description: HNH Note: nucleases Location: 53 798-53 93 6 bp Feature: gene Location: 54125-56896 bp Ori: CRO44620.1 Gene: lptD Feature: domain Description: LptD Location: 54320-56882 bp Feature: domain Description: LptD Location: 543 20-56882 bp Feature: gene Location: 56877-58169 bp Ori: CRO44662.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 56967-58161 bp Feature: domain Description: PRK10770 Location: 56967-58161 bp Feature: gene Location: 74425-76278 bp Ori: CRO45429.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 74437-76276 bp Feature: domain Description: PRK05658 Location: 7443 7-76276 bp Feature: gene Location: 76385-80122 bp Ori: CRO45471.1 Gene: cph2_5 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76493-77150 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76493 -77150 bp Feature: domain Description: PRK09776 Location: 77363-77834 bp Feature: domain Description: PRK09776 Location: 773 63 -7783 4 bp Feature: domain Description: PAS Location: 77891-78416 bp Feature: domain Description: PAS Location: 77891-78416 bp Feature: domain Description: PRK10060 Location: 78428-80072 bp Feature: domain Description: PRK10060 Location: 78428-80072 bp Feature: gene Location: 81203-82888 bp Ori: CRO45506.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 81260-81500 bp Feature: domain Description: RVT_N Location: 81260-81500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81548-82184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81548-82184 bp Feature: domain Description: GIIM Note: maturase Location: 82238-82469 bp Feature: domain Description: GIIM Note: maturase Location: 8223 8-82469 bp Feature: domain Description: HNH Note: nucleases Location: 82721-82859 bp Feature: domain Description: HNH Note: nucleases Location: 82721-82859 bp Feature: gene Location: 84193-84432 bp Ori: CRO45568.1 Feature: domain Description: HTH_XRE Location: 84205-84349 bp Feature: domain Description: HTH_XRE Location: 84205-843 49 bp Feature: gene Location: 84530-84760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), GIIM (pfam08388), HTH_XRE (smart00530)

Seq: CVVC01000123.1 Pseudomonas aeruginosa genome assembly P39_London_29_08_12, contig P39_London_29_08_12_contig132, whole genome shotgun sequence (250283 bp)
Overview 1 RT 1: 160286-165975 bp Neighborhood of RT #1 [160286, 165975] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 160286-161122 bp Ori: CRP31606.1 Feature: domain Description: HDOD Location: 160289-161117 bp Feature: domain Description: HDOD Location: 160289-161117 bp Feature: gene Location: 161223-162167 bp Ori: CRP31643.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 161232-162132 bp Feature: domain Description: YgfZ Location: 161232-162132 bp Feature: gene Location: 163890-165209 bp Ori: CRP31678.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163893-164469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163893-164 4 69 bp Feature: domain Description: YkfC Location: 164667-164823 bp Feature: domain Description: YkfC Location: 164 667-164 823 bp Feature: domain Description: HNH Note: nucleases Location: 165006-165144 bp Feature: domain Description: HNH Note: nucleases Location: 165006-16514 4 bp Feature: gene Location: 165285-165539 bp Ori: CRP31717.1 Gene: cptB Feature: domain Description: SdhE Location: 165291-165531 bp Feature: domain Description: SdhE Location: 165291-165531 bp Feature: gene Location: 165523-165975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)