myRT

myRT report for GCA_001181205.1_P40_Scotland_4_VIM_2_09_12

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Seq: CVUM01000089.1 Pseudomonas aeruginosa genome assembly P40_Scotland_4_VIM_2_09_12, contig P40_Scotland_4_VIM_2_09_12_contig97, whole genome shotgun sequence (133868 bp)
Overview 1 RT 1: 49944-58114 bp 2 RT 2: 74378-84714 bp Neighborhood of RT #1 [49944, 58122] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74378, 84714] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH HTH_XRE Feature: gene Location: 49944-50960 bp Ori: CRN22546.1 Feature: domain Description: COG3178 Location: 49947-50946 bp Feature: domain Description: COG31 78 Location: 49947-50946 bp Feature: gene Location: 51257-51391 bp Feature: gene Location: 52233-53945 bp Ori: CRN22564.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 52290-52533 bp Feature: domain Description: RVT_N Location: 52290-52533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52578-53214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52578-5321 4 bp Feature: domain Description: YkfC Location: 53424-53574 bp Feature: domain Description: YkfC Location: 53424-53574 bp Feature: domain Description: HNH Note: nucleases Location: 53751-53889 bp Feature: domain Description: HNH Note: nucleases Location: 53751 -53889 bp Feature: gene Location: 54078-56849 bp Ori: CRN22573.1 Gene: lptD Feature: domain Description: LptD Location: 54273-56835 bp Feature: domain Description: LptD Location: 54273-56835 bp Feature: gene Location: 56830-58122 bp Ori: CRN22581.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 56920-58114 bp Feature: domain Description: PRK1 0770 Location: 56920-581 1 4 bp Feature: gene Location: 74378-76231 bp Ori: CRN22758.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 74390-76229 bp Feature: domain Description: PRK05658 Location: 74390-76229 bp Feature: gene Location: 76338-80075 bp Ori: CRN22767.1 Gene: cph2_3 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76446-77103 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76446-771 03 bp Feature: domain Description: PRK09776 Location: 77316-77787 bp Feature: domain Description: PRK09776 Location: 7731 6-77787 bp Feature: domain Description: PAS Location: 77844-78369 bp Feature: domain Description: PAS Location: 77844-78369 bp Feature: domain Description: PRK10060 Location: 78381-80025 bp Feature: domain Description: PRK1 0060 Location: 78381 -80025 bp Feature: gene Location: 81156-82841 bp Ori: CRN22777.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 81213-81453 bp Feature: domain Description: RVT_N Location: 81 21 3-81 453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81501-82137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 501 -821 37 bp Feature: domain Description: GIIM Note: maturase Location: 82191-82422 bp Feature: domain Description: GIIM Note: maturase Location: 821 91 -82422 bp Feature: domain Description: HNH Note: nucleases Location: 82674-82812 bp Feature: domain Description: HNH Note: nucleases Location: 82674-8281 2 bp Feature: gene Location: 84147-84386 bp Ori: CRN22788.1 Feature: domain Description: HTH_XRE Location: 84159-84303 bp Feature: domain Description: HTH_XRE Location: 841 59-84303 bp Feature: gene Location: 84484-84714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), HTH_XRE (smart00530)

Seq: CVUM01000011.1 Pseudomonas aeruginosa genome assembly P40_Scotland_4_VIM_2_09_12, contig P40_Scotland_4_VIM_2_09_12_contig11, whole genome shotgun sequence (184402 bp)
Overview 1 RT 1: 93009-98693 bp Neighborhood of RT #1 [93009, 98698] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 93009-93461 bp Feature: gene Location: 93445-93699 bp Ori: CRN13898.1 Gene: cptB Feature: domain Description: SdhE Location: 93451-93691 bp Feature: domain Description: SdhE Location: 93451-93691 bp Feature: gene Location: 93775-95094 bp Ori: CRN13901.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93778-94354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93778-94354 bp Feature: domain Description: YkfC Location: 94552-94708 bp Feature: domain Description: YkfC Location: 94552 -94708 bp Feature: domain Description: HNH Note: nucleases Location: 94891-95029 bp Feature: domain Description: HNH Note: nucleases Location: 94891-9502 9 bp Feature: gene Location: 96817-97761 bp Ori: CRN13903.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 96826-97726 bp Feature: domain Description: YgfZ Location: 9682 6-9772 6 bp Feature: gene Location: 97862-98698 bp Ori: CRN13905.1 Feature: domain Description: HDOD Location: 97865-98693 bp Feature: domain Description: HDOD Location: 97865-98693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CVUM01000136.1 Pseudomonas aeruginosa genome assembly P40_Scotland_4_VIM_2_09_12, contig P40_Scotland_4_VIM_2_09_12_contig144, whole genome shotgun sequence (35977 bp)
Overview 1 RT 1: 1803-9113 bp Neighborhood of RT #1 [1803, 10168] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1803-2942 bp Ori: CRO38798.1 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRO38870.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 991-4462 bp Feature: gene Location: 7430-8293 bp Ori: CRO38911.1 Feature: domain Description: YeeA Location: 7454-8159 bp Feature: domain Description: YeeA Location: 7454-8159 bp Feature: gene Location: 8297-10168 bp Ori: CRO38949.1 Feature: domain Description: DUF262 Location: 8345-9113 bp Feature: domain Description: DUF262 Location: 83 45-9113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: CVUM01000135.1 Pseudomonas aeruginosa genome assembly P40_Scotland_4_VIM_2_09_12, contig P40_Scotland_4_VIM_2_09_12_contig143, whole genome shotgun sequence (38184 bp)
Overview 1 RT 1: 20-5660 bp Neighborhood of RT #1 [20, 5857] DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 20-661 bp Ori: CRO37109.1 Feature: domain Description: DUF772 Location: 170-365 bp Feature: domain Description: DUF772 Location: 170-365 bp Feature: gene Location: 1050-2318 bp Ori: CRO37144.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: gene Location: 3050-3229 bp Feature: gene Location: 4313-5857 bp Ori: CRO37226.1 Feature: domain Description: CHD Location: 4529-4943 bp Feature: domain Description: CHD Location: 4 529-4 94 3 bp Feature: domain Description: CHD Location: 5171-5660 bp Feature: domain Description: CHD Location: 5171-5660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)