myRT

myRT report for GCA_001181225.1_P41_London_28_09_12

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Seq: CVVR01000166.1 Pseudomonas aeruginosa genome assembly P41_London_28_09_12, contig P41_London_28_09_12_contig177, whole genome shotgun sequence (32174 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRP48158.1 Gene: glnQ_4 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRP48185.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRP48211.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRP48257.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 1 0239-1 0653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 1 0881 -1 1 370 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CVVR01000160.1 Pseudomonas aeruginosa genome assembly P41_London_28_09_12, contig P41_London_28_09_12_contig171, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 1803-9114 bp Neighborhood of RT #1 [1803, 10169] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1803-2942 bp Ori: CRP41694.1 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_2 1 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_2 1 Location: 2 418-2 748 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRP41749.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: gene Location: 7431-8294 bp Ori: CRP41776.1 Feature: domain Description: YeeA Location: 7455-8160 bp Feature: domain Description: YeeA Location: 7455-8160 bp Feature: gene Location: 8298-10169 bp Ori: CRP41803.1 Feature: domain Description: DUF262 Location: 8346-9114 bp Feature: domain Description: DUF2 62 Location: 8346-9114 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CVVR01000044.1 Pseudomonas aeruginosa genome assembly P41_London_28_09_12, contig P41_London_28_09_12_contig44, whole genome shotgun sequence (130924 bp)
Overview 1 RT 1: 84407-90096 bp Neighborhood of RT #1 [84407, 90096] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 84407-85243 bp Ori: CRN82388.1 Feature: domain Description: HDOD Location: 84410-85238 bp Feature: domain Description: HDOD Location: 84410-8523 8 bp Feature: gene Location: 85344-86288 bp Ori: CRN82411.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 85353-86253 bp Feature: domain Description: YgfZ Location: 853 53 -86253 bp Feature: gene Location: 88011-89330 bp Ori: CRN82436.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88014-88590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88014-88590 bp Feature: domain Description: YkfC Location: 88788-88944 bp Feature: domain Description: YkfC Location: 88788-88944 bp Feature: domain Description: HNH Note: nucleases Location: 89127-89265 bp Feature: domain Description: HNH Note: nucleases Location: 89127-89265 bp Feature: gene Location: 89406-89660 bp Ori: CRN82459.1 Gene: cptB Feature: domain Description: SdhE Location: 89412-89652 bp Feature: domain Description: SdhE Location: 89412-89652 bp Feature: gene Location: 89644-90096 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CVVR01000119.1 Pseudomonas aeruginosa genome assembly P41_London_28_09_12, contig P41_London_28_09_12_contig130, whole genome shotgun sequence (104104 bp)
Overview 1 RT 1: 19432-29737 bp 2 RT 2: 45995-54159 bp Neighborhood of RT #1 [19432, 29739] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [45995, 54173] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 19432-20553 bp Ori: CRO37821.1 Feature: domain Description: COG3177 Location: 19450-20542 bp Feature: domain Description: COG3177 Location: 194 50-2054 2 bp Feature: gene Location: 20812-20973 bp Feature: gene Location: 21276-22961 bp Ori: CRO37886.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 21333-21573 bp Feature: domain Description: RVT_N Location: 21333-21573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21621-22257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21621-22257 bp Feature: domain Description: GIIM Note: maturase Location: 22311-22542 bp Feature: domain Description: GIIM Note: maturase Location: 22311-2254 2 bp Feature: domain Description: HNH Note: nucleases Location: 22794-22932 bp Feature: domain Description: HNH Note: nucleases Location: 22794 -22932 bp Feature: gene Location: 24042-27779 bp Ori: CRO37915.1 Gene: cph2_4 Feature: domain Description: PBP2_BvgS_HisK_like Location: 24150-24807 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 24 150-24 807 bp Feature: domain Description: PRK09776 Location: 25020-25491 bp Feature: domain Description: PRK09776 Location: 25020-254 91 bp Feature: domain Description: PAS Location: 25548-26073 bp Feature: domain Description: PAS Location: 2554 8-26073 bp Feature: domain Description: PRK10060 Location: 26085-27729 bp Feature: domain Description: PRK10060 Location: 26085-27729 bp Feature: gene Location: 27886-29739 bp Ori: CRO37948.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 27898-29737 bp Feature: domain Description: PRK05658 Location: 27898-29737 bp Feature: gene Location: 45995-47287 bp Ori: CRO38510.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 46085-47279 bp Feature: domain Description: PRK10770 Location: 4 6085-4 7279 bp Feature: gene Location: 47268-50039 bp Ori: CRO38548.1 Gene: lptD Feature: domain Description: LptD Location: 47463-50025 bp Feature: domain Description: LptD Location: 4 74 63-50025 bp Feature: gene Location: 50172-51482 bp Ori: CRO38579.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50175-50751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50175-50751 bp Feature: domain Description: YkfC Location: 50961-51114 bp Feature: domain Description: YkfC Location: 50961-51114 bp Feature: domain Description: HNH Note: nucleases Location: 51288-51426 bp Feature: domain Description: HNH Note: nucleases Location: 51288-514 26 bp Feature: gene Location: 52726-52860 bp Feature: gene Location: 53157-54173 bp Ori: CRO38630.1 Feature: domain Description: COG3178 Location: 53160-54159 bp Feature: domain Description: COG3178 Location: 53160-54 159 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CVVR01000202.1 Pseudomonas aeruginosa genome assembly P41_London_28_09_12, contig P41_London_28_09_12_contig213, whole genome shotgun sequence (152256 bp)
Overview 1 RT 1: 105031-109748 bp Neighborhood of RT #1 [105031, 109748] DUF3085 RVT-GII GIIM Feature: gene Location: 105031-105396 bp Ori: CRP86418.1 Feature: domain Description: DUF3085 Location: 105097-105367 bp Feature: domain Description: DUF3085 Location: 105 097-105 367 bp Feature: gene Location: 105461-106258 bp Feature: gene Location: 106598-107797 bp Ori: CRP86477.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106763-107378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106763-107378 bp Feature: domain Description: GIIM Note: maturase Location: 107435-107651 bp Feature: domain Description: GIIM Note: maturase Location: 107435 -10765 1 bp Feature: gene Location: 108389-109105 bp Feature: gene Location: 109356-109748 bp Sorry, your browser does not support inline SVG.
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