myRT

myRT report for GCA_001181305.1_P45_London_17_VIM_2_12_12

Download annotations/find similar RTs

Seq: CVWO01000055.1 Pseudomonas aeruginosa genome assembly P45_London_17_VIM_2_12_12, contig P45_London_17_VIM_2_12_12_contig55, whole genome shotgun sequence (54348 bp)
Overview 1 RT 1: 404-4391 bp Neighborhood of RT #1 [404, 4405] RVT-GII YkfC HNH COG3178 Feature: gene Location: 404-1714 bp Ori: CRQ70947.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407-983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407-983 bp Feature: domain Description: YkfC Location: 1193-1346 bp Feature: domain Description: YkfC Location: 1 1 93-1 346 bp Feature: domain Description: HNH Note: nucleases Location: 1520-1658 bp Feature: domain Description: HNH Note: nucleases Location: 1 520-1 658 bp Feature: gene Location: 2958-3092 bp Feature: gene Location: 3389-4405 bp Ori: CRQ70969.1 Feature: domain Description: COG3178 Location: 3392-4391 bp Feature: domain Description: COG31 78 Location: 3392-4391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVWO01000636.1 Pseudomonas aeruginosa genome assembly P45_London_17_VIM_2_12_12, contig P45_London_17_VIM_2_12_12_contig710, whole genome shotgun sequence (23214 bp)
Overview 1 RT 1: 13104-22031 bp Neighborhood of RT #1 [13104, 22031] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH Feature: gene Location: 13104-14957 bp Ori: CRS01156.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 13116-14955 bp Feature: domain Description: PRK05658 Location: 13116-14955 bp Feature: gene Location: 15064-18801 bp Ori: CRS01174.1 Gene: cph2_11 Feature: domain Description: PBP2_BvgS_HisK_like Location: 15172-15829 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 15172 -1582 9 bp Feature: domain Description: PRK09776 Location: 16042-16513 bp Feature: domain Description: PRK09776 Location: 16042 -16513 bp Feature: domain Description: PAS Location: 16570-17095 bp Feature: domain Description: PAS Location: 16570-17095 bp Feature: domain Description: PRK10060 Location: 17107-18751 bp Feature: domain Description: PRK10060 Location: 17107-18751 bp Feature: gene Location: 19882-21567 bp Ori: CRS01190.1 Gene: ltrA_4 Feature: domain Description: RVT_N Location: 19939-20179 bp Feature: domain Description: RVT_N Location: 19939-2 0179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20227-20863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 2 7-2 0863 bp Feature: domain Description: GIIM Note: maturase Location: 20917-21148 bp Feature: domain Description: GIIM Note: maturase Location: 2 0917-2 1148 bp Feature: domain Description: HNH Note: nucleases Location: 21400-21538 bp Feature: domain Description: HNH Note: nucleases Location: 2 1400-2 1538 bp Feature: gene Location: 21870-22031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: CVWO01000168.1 Pseudomonas aeruginosa genome assembly P45_London_17_VIM_2_12_12, contig P45_London_17_VIM_2_12_12_contig168, whole genome shotgun sequence (9507 bp)
Overview 1 RT 1: 3922-9389 bp Neighborhood of RT #1 [3922, 9389] CHD CHD RVT-GII GIIM Feature: gene Location: 3922-5466 bp Ori: CRQ98118.1 Feature: domain Description: CHD Location: 4138-4552 bp Feature: domain Description: CHD Location: 413 8-4552 bp Feature: domain Description: CHD Location: 4780-5269 bp Feature: domain Description: CHD Location: 4780-5269 bp Feature: gene Location: 6550-6729 bp Feature: gene Location: 7461-8729 bp Ori: CRQ98140.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7674-8331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7674-83 3 1 bp Feature: domain Description: GIIM Note: maturase Location: 8409-8631 bp Feature: domain Description: GIIM Note: maturase Location: 8409-863 1 bp Feature: gene Location: 9222-9389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: CVWO01000021.1 Pseudomonas aeruginosa genome assembly P45_London_17_VIM_2_12_12, contig P45_London_17_VIM_2_12_12_contig21, whole genome shotgun sequence (18338 bp)
Overview 1 RT 1: 8170-16342 bp Neighborhood of RT #1 [8170, 16536] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 8170-10041 bp Ori: CRQ58878.1 Feature: domain Description: DUF262 Location: 8218-8986 bp Feature: domain Description: DUF262 Location: 8218-8986 bp Feature: gene Location: 10045-10908 bp Ori: CRQ58900.1 Feature: domain Description: YeeA Location: 10069-10774 bp Feature: domain Description: YeeA Location: 10069-10774 bp Feature: gene Location: 11823-14843 bp Ori: CRQ58920.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 12318-12789 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 12318-12789 bp Feature: gene Location: 14840-15397 bp Feature: gene Location: 15397-16536 bp Ori: CRQ58955.1 Feature: domain Description: AAA_21 Location: 15469-15538 bp Feature: domain Description: AAA_21 Location: 154 69-15538 bp Feature: domain Description: AAA_21 Location: 16012-16342 bp Feature: domain Description: AAA_21 Location: 16012-1634 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVWO01000085.1 Pseudomonas aeruginosa genome assembly P45_London_17_VIM_2_12_12, contig P45_London_17_VIM_2_12_12_contig85, whole genome shotgun sequence (14143 bp)
Overview 1 RT 1: 4775-10464 bp Neighborhood of RT #1 [4775, 10464] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 4775-5611 bp Ori: CRQ78494.1 Feature: domain Description: HDOD Location: 4778-5606 bp Feature: domain Description: HDOD Location: 4778-5 606 bp Feature: gene Location: 5712-6656 bp Ori: CRQ78507.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 5721-6621 bp Feature: domain Description: YgfZ Location: 5 721-6621 bp Feature: gene Location: 8379-9698 bp Ori: CRQ78519.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8382-8958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8382-895 8 bp Feature: domain Description: YkfC Location: 9156-9312 bp Feature: domain Description: YkfC Location: 915 6-9312 bp Feature: domain Description: HNH Note: nucleases Location: 9495-9633 bp Feature: domain Description: HNH Note: nucleases Location: 9495 -9633 bp Feature: gene Location: 9774-10028 bp Ori: CRQ78530.1 Gene: cptB Feature: domain Description: SdhE Location: 9780-10020 bp Feature: domain Description: SdhE Location: 9780-10020 bp Feature: gene Location: 10012-10464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)