myRT

myRT report for GCA_001181325.1_E5_London_17_VIM_2_12_12

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Seq: CVWE01000348.1 Pseudomonas aeruginosa genome assembly E5_London_17_VIM_2_12_12, contig E5_London_17_VIM_2_12_12_contig368, whole genome shotgun sequence (5067 bp)
Overview 1 RT 1: 20-4853 bp Neighborhood of RT #1 [20, 5050] DUF772 RVT-GII GIIM CHD Feature: gene Location: 20-661 bp Ori: CRQ72982.1 Feature: domain Description: DUF772 Location: 170-365 bp Feature: domain Description: DUF772 Location: 1 70-365 bp Feature: gene Location: 1050-2318 bp Ori: CRQ72991.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 263-1 920 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: domain Description: GIIM Note: maturase Location: 1 998-2220 bp Feature: gene Location: 3050-3229 bp Feature: gene Location: 4313-5050 bp Ori: CRQ73014.1 Feature: domain Description: CHD Location: 4364-4853 bp Feature: domain Description: CHD Location: 4364-4853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVWE01000555.1 Pseudomonas aeruginosa genome assembly E5_London_17_VIM_2_12_12, contig E5_London_17_VIM_2_12_12_contig575, whole genome shotgun sequence (57768 bp)
Overview 1 RT 1: 3575-11745 bp 2 RT 2: 28038-38334 bp Neighborhood of RT #1 [3575, 11753] COG3178 RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [28038, 38345] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 3575-4591 bp Ori: CRQ93558.1 Feature: domain Description: COG3178 Location: 3578-4577 bp Feature: domain Description: COG3178 Location: 3578-4577 bp Feature: gene Location: 4888-5022 bp Feature: gene Location: 6266-7576 bp Ori: CRQ93589.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6269-6845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 69-6845 bp Feature: domain Description: YkfC Location: 7055-7208 bp Feature: domain Description: YkfC Location: 7055-72 08 bp Feature: domain Description: HNH Note: nucleases Location: 7382-7520 bp Feature: domain Description: HNH Note: nucleases Location: 7382 -752 0 bp Feature: gene Location: 7709-10480 bp Ori: CRQ93606.1 Gene: lptD Feature: domain Description: LptD Location: 7904-10466 bp Feature: domain Description: LptD Location: 7904-10466 bp Feature: gene Location: 10461-11753 bp Ori: CRQ93620.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 10551-11745 bp Feature: domain Description: PRK10770 Location: 10551-11745 bp Feature: gene Location: 28038-29891 bp Ori: CRQ93896.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 28050-29889 bp Feature: domain Description: PRK05658 Location: 2 8050-2 9889 bp Feature: gene Location: 29998-33735 bp Ori: CRQ93911.1 Gene: cph2_8 Feature: domain Description: PBP2_BvgS_HisK_like Location: 30106-30763 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 30106-30763 bp Feature: domain Description: PRK09776 Location: 30976-31447 bp Feature: domain Description: PRK09776 Location: 30976-31447 bp Feature: domain Description: PAS Location: 31504-32029 bp Feature: domain Description: PAS Location: 31504-32 02 9 bp Feature: domain Description: PRK10060 Location: 32041-33685 bp Feature: domain Description: PRK10060 Location: 32 041-33685 bp Feature: gene Location: 34816-36501 bp Ori: CRQ93928.1 Gene: ltrA_4 Feature: domain Description: RVT_N Location: 34873-35113 bp Feature: domain Description: RVT_N Location: 34873-35113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35161-35797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35161-35797 bp Feature: domain Description: GIIM Note: maturase Location: 35851-36082 bp Feature: domain Description: GIIM Note: maturase Location: 35851-36082 bp Feature: domain Description: HNH Note: nucleases Location: 36334-36472 bp Feature: domain Description: HNH Note: nucleases Location: 36334-36472 bp Feature: gene Location: 36804-36965 bp Feature: gene Location: 37224-38345 bp Ori: CRQ93960.1 Feature: domain Description: COG3177 Location: 37242-38334 bp Feature: domain Description: COG3177 Location: 372 42 -38334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: CVWE01000188.1 Pseudomonas aeruginosa genome assembly E5_London_17_VIM_2_12_12, contig E5_London_17_VIM_2_12_12_contig208, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 1803-9114 bp Neighborhood of RT #1 [1803, 10169] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1803-2942 bp Ori: CRQ37341.1 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRQ37372.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 991-4462 bp Feature: gene Location: 7431-8294 bp Ori: CRQ37391.1 Feature: domain Description: YeeA Location: 7455-8160 bp Feature: domain Description: YeeA Location: 7455-8160 bp Feature: gene Location: 8298-10169 bp Ori: CRQ37411.1 Feature: domain Description: DUF262 Location: 8346-9114 bp Feature: domain Description: DUF262 Location: 83 46-9114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: CVWE01000266.1 Pseudomonas aeruginosa genome assembly E5_London_17_VIM_2_12_12, contig E5_London_17_VIM_2_12_12_contig286, whole genome shotgun sequence (32550 bp)
Overview 1 RT 1: 10814-16503 bp Neighborhood of RT #1 [10814, 16503] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 10814-11650 bp Ori: CRQ59394.1 Feature: domain Description: HDOD Location: 10817-11645 bp Feature: domain Description: HDOD Location: 10817-1164 5 bp Feature: gene Location: 11751-12695 bp Ori: CRQ59427.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 11760-12660 bp Feature: domain Description: YgfZ Location: 11760-12660 bp Feature: gene Location: 14418-15737 bp Ori: CRQ59443.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14421-14997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 4 21-14 997 bp Feature: domain Description: YkfC Location: 15195-15351 bp Feature: domain Description: YkfC Location: 15195-15351 bp Feature: domain Description: HNH Note: nucleases Location: 15534-15672 bp Feature: domain Description: HNH Note: nucleases Location: 15534 -15672 bp Feature: gene Location: 15813-16067 bp Ori: CRQ59461.1 Gene: cptB Feature: domain Description: SdhE Location: 15819-16059 bp Feature: domain Description: SdhE Location: 15819-16059 bp Feature: gene Location: 16051-16503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)