myRT

myRT report for GCA_001181345.1_E6_London_17_VIM_2_12_12

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Seq: CVWD01000071.1 Pseudomonas aeruginosa genome assembly E6_London_17_VIM_2_12_12, contig E6_London_17_VIM_2_12_12_contig71, whole genome shotgun sequence (10513 bp)
Overview 1 RT 1: 20-5660 bp Neighborhood of RT #1 [20, 5857] DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 20-661 bp Ori: CRP22943.1 Feature: domain Description: DUF772 Location: 170-365 bp Feature: domain Description: DUF772 Location: 1 70-365 bp Feature: gene Location: 1050-2318 bp Ori: CRP22964.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 263-1 920 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: domain Description: GIIM Note: maturase Location: 1 998-2220 bp Feature: gene Location: 3050-3229 bp Feature: gene Location: 4313-5857 bp Ori: CRP23009.1 Feature: domain Description: CHD Location: 4529-4943 bp Feature: domain Description: CHD Location: 4529-4943 bp Feature: domain Description: CHD Location: 5171-5660 bp Feature: domain Description: CHD Location: 51 71 -5660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVWD01000077.1 Pseudomonas aeruginosa genome assembly E6_London_17_VIM_2_12_12, contig E6_London_17_VIM_2_12_12_contig77, whole genome shotgun sequence (75012 bp)
Overview 1 RT 1: 49944-58114 bp Neighborhood of RT #1 [49944, 58122] COG3178 RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 49944-50960 bp Ori: CRP27780.1 Feature: domain Description: COG3178 Location: 49947-50946 bp Feature: domain Description: COG3178 Location: 49947-50946 bp Feature: gene Location: 51257-51391 bp Feature: gene Location: 52635-53945 bp Ori: CRP27833.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52638-53214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 638-532 14 bp Feature: domain Description: YkfC Location: 53424-53577 bp Feature: domain Description: YkfC Location: 5342 4-53577 bp Feature: domain Description: HNH Note: nucleases Location: 53751-53889 bp Feature: domain Description: HNH Note: nucleases Location: 53751-53889 bp Feature: gene Location: 54078-56849 bp Ori: CRP27855.1 Gene: lptD Feature: domain Description: LptD Location: 54273-56835 bp Feature: domain Description: LptD Location: 542 73-56835 bp Feature: gene Location: 56830-58122 bp Ori: CRP27886.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 56920-58114 bp Feature: domain Description: PRK10770 Location: 5692 0-58114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: CVWD01000022.1 Pseudomonas aeruginosa genome assembly E6_London_17_VIM_2_12_12, contig E6_London_17_VIM_2_12_12_contig22, whole genome shotgun sequence (89925 bp)
Overview 1 RT 1: 40824-46508 bp Neighborhood of RT #1 [40824, 46513] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40824-41276 bp Feature: gene Location: 41260-41514 bp Ori: CRO78812.1 Gene: cptB Feature: domain Description: SdhE Location: 41266-41506 bp Feature: domain Description: SdhE Location: 41266-41506 bp Feature: gene Location: 41590-42909 bp Ori: CRO78850.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41593-42169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41593 -42169 bp Feature: domain Description: YkfC Location: 42367-42523 bp Feature: domain Description: YkfC Location: 423 67-42523 bp Feature: domain Description: HNH Note: nucleases Location: 42706-42844 bp Feature: domain Description: HNH Note: nucleases Location: 42706-42844 bp Feature: gene Location: 44632-45576 bp Ori: CRO78890.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 44641-45541 bp Feature: domain Description: YgfZ Location: 44641-45541 bp Feature: gene Location: 45677-46513 bp Ori: CRO78928.1 Feature: domain Description: HDOD Location: 45680-46508 bp Feature: domain Description: HDOD Location: 45680-46508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CVWD01000618.1 Pseudomonas aeruginosa genome assembly E6_London_17_VIM_2_12_12, contig E6_London_17_VIM_2_12_12_contig624, whole genome shotgun sequence (29118 bp)
Overview 1 RT 1: 170-9686 bp Neighborhood of RT #1 [170, 9697] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 170-1243 bp Ori: CRQ69197.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 179-1241 bp Feature: domain Description: PRK05658 Location: 179-124 1 bp Feature: gene Location: 1350-5087 bp Ori: CRQ69208.1 Gene: cph2_10 Feature: domain Description: PBP2_BvgS_HisK_like Location: 1458-2115 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 14 58-2115 bp Feature: domain Description: PRK09776 Location: 2328-2799 bp Feature: domain Description: PRK09776 Location: 2328-2799 bp Feature: domain Description: PAS Location: 2856-3381 bp Feature: domain Description: PAS Location: 2856-3381 bp Feature: domain Description: PRK10060 Location: 3393-5037 bp Feature: domain Description: PRK10060 Location: 3393-5037 bp Feature: gene Location: 6168-7853 bp Ori: CRQ69217.1 Gene: ltrA_4 Feature: domain Description: RVT_N Location: 6225-6465 bp Feature: domain Description: RVT_N Location: 6225-64 65 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6513-7149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6513-714 9 bp Feature: domain Description: GIIM Note: maturase Location: 7203-7434 bp Feature: domain Description: GIIM Note: maturase Location: 7203-74 34 bp Feature: domain Description: HNH Note: nucleases Location: 7686-7824 bp Feature: domain Description: HNH Note: nucleases Location: 7686-7824 bp Feature: gene Location: 8156-8317 bp Feature: gene Location: 8576-9697 bp Ori: CRQ69242.1 Feature: domain Description: COG3177 Location: 8594-9686 bp Feature: domain Description: COG3177 Location: 8594 -9686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )

Seq: CVWD01000034.1 Pseudomonas aeruginosa genome assembly E6_London_17_VIM_2_12_12, contig E6_London_17_VIM_2_12_12_contig34, whole genome shotgun sequence (17446 bp)
Overview 1 RT 1: 7278-15450 bp Neighborhood of RT #1 [7278, 15644] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 7278-9149 bp Ori: CRO93114.1 Feature: domain Description: DUF262 Location: 7326-8094 bp Feature: domain Description: DUF262 Location: 7326-8094 bp Feature: gene Location: 9153-10016 bp Ori: CRO93148.1 Feature: domain Description: YeeA Location: 9177-9882 bp Feature: domain Description: YeeA Location: 9177-9882 bp Feature: gene Location: 10931-13951 bp Ori: CRO93170.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 11426-11897 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 11426-11897 bp Feature: gene Location: 13948-14505 bp Feature: gene Location: 14505-15644 bp Ori: CRO93233.1 Feature: domain Description: AAA_21 Location: 14577-14646 bp Feature: domain Description: AAA_21 Location: 145 77-14646 bp Feature: domain Description: AAA_21 Location: 15120-15450 bp Feature: domain Description: AAA_21 Location: 15 120-15 45 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)