myRT

myRT report for GCA_001181365.1_P46_South_East_6_12_12

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Seq: CVWM01000196.1 Pseudomonas aeruginosa genome assembly P46_South_East_6_12_12, contig P46_South_East_6_12_12_contig207, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 1803-9114 bp Neighborhood of RT #1 [1803, 10169] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1803-2942 bp Ori: CRQ91411.1 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 1 875-1 944 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_21 Location: 241 8-2748 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRQ91428.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991 -4462 bp Feature: gene Location: 7431-8294 bp Ori: CRQ91441.1 Feature: domain Description: YeeA Location: 7455-8160 bp Feature: domain Description: YeeA Location: 7455-81 60 bp Feature: gene Location: 8298-10169 bp Ori: CRQ91456.1 Feature: domain Description: DUF262 Location: 8346-9114 bp Feature: domain Description: DUF262 Location: 8346-91 1 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: CVWM01000222.1 Pseudomonas aeruginosa genome assembly P46_South_East_6_12_12, contig P46_South_East_6_12_12_contig233, whole genome shotgun sequence (141335 bp)
Overview 1 RT 1: 56651-66956 bp 2 RT 2: 83214-91378 bp Neighborhood of RT #1 [56651, 66958] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [83214, 91392] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 56651-57772 bp Ori: CRR10205.1 Feature: domain Description: COG3177 Location: 56669-57761 bp Feature: domain Description: COG3177 Location: 56669-57761 bp Feature: gene Location: 58031-58192 bp Feature: gene Location: 58495-60180 bp Ori: CRR10258.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 58552-58792 bp Feature: domain Description: RVT_N Location: 58552 -58792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58840-59476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58840-59476 bp Feature: domain Description: GIIM Note: maturase Location: 59530-59761 bp Feature: domain Description: GIIM Note: maturase Location: 59530-59761 bp Feature: domain Description: HNH Note: nucleases Location: 60013-60151 bp Feature: domain Description: HNH Note: nucleases Location: 60013-60151 bp Feature: gene Location: 61261-64998 bp Ori: CRR10282.1 Gene: cph2_9 Feature: domain Description: PBP2_BvgS_HisK_like Location: 61369-62026 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 61369-62 02 6 bp Feature: domain Description: PRK09776 Location: 62239-62710 bp Feature: domain Description: PRK09776 Location: 62 2 39-62 710 bp Feature: domain Description: PAS Location: 62767-63292 bp Feature: domain Description: PAS Location: 62 767-632 92 bp Feature: domain Description: PRK10060 Location: 63304-64948 bp Feature: domain Description: PRK10060 Location: 63304-64948 bp Feature: gene Location: 65105-66958 bp Ori: CRR10310.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 65117-66956 bp Feature: domain Description: PRK05658 Location: 65117-66956 bp Feature: gene Location: 83214-84506 bp Ori: CRR10723.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 83304-84498 bp Feature: domain Description: PRK10770 Location: 83304-84498 bp Feature: gene Location: 84487-87258 bp Ori: CRR10745.1 Gene: lptD Feature: domain Description: LptD Location: 84682-87244 bp Feature: domain Description: LptD Location: 84682 -872 44 bp Feature: gene Location: 87391-88701 bp Ori: CRR10768.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87394-87970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87394-87970 bp Feature: domain Description: YkfC Location: 88180-88333 bp Feature: domain Description: YkfC Location: 88180-88333 bp Feature: domain Description: HNH Note: nucleases Location: 88507-88645 bp Feature: domain Description: HNH Note: nucleases Location: 88507-88645 bp Feature: gene Location: 89945-90079 bp Feature: gene Location: 90376-91392 bp Ori: CRR10813.1 Feature: domain Description: COG3178 Location: 90379-91378 bp Feature: domain Description: COG3178 Location: 90379-91378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVWM01000167.1 Pseudomonas aeruginosa genome assembly P46_South_East_6_12_12, contig P46_South_East_6_12_12_contig178, whole genome shotgun sequence (170817 bp)
Overview 1 RT 1: 83622-89311 bp Neighborhood of RT #1 [83622, 89311] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 83622-84458 bp Ori: CRQ72572.1 Feature: domain Description: HDOD Location: 83625-84453 bp Feature: domain Description: HDOD Location: 83 625-84453 bp Feature: gene Location: 84559-85503 bp Ori: CRQ72583.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 84568-85468 bp Feature: domain Description: YgfZ Location: 84568-85468 bp Feature: gene Location: 87226-88545 bp Ori: CRQ72594.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87229-87805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87229-87805 bp Feature: domain Description: YkfC Location: 88003-88159 bp Feature: domain Description: YkfC Location: 88003 -88159 bp Feature: domain Description: HNH Note: nucleases Location: 88342-88480 bp Feature: domain Description: HNH Note: nucleases Location: 883 42-88480 bp Feature: gene Location: 88621-88875 bp Ori: CRQ72603.1 Gene: cptB Feature: domain Description: SdhE Location: 88627-88867 bp Feature: domain Description: SdhE Location: 88627-88867 bp Feature: gene Location: 88859-89311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVWM01000183.1 Pseudomonas aeruginosa genome assembly P46_South_East_6_12_12, contig P46_South_East_6_12_12_contig194, whole genome shotgun sequence (43894 bp)
Overview 1 RT 1: 4753-11370 bp Neighborhood of RT #1 [4753, 11567] LysR DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4753-5622 bp Ori: CRQ83956.1 Gene: cmpR_5 Feature: domain Description: LysR Location: 4771-5575 bp Feature: domain Description: LysR Location: 4 771-5575 bp Feature: gene Location: 5730-6371 bp Ori: CRQ83968.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRQ83980.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRQ84003.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)