myRT

myRT report for GCA_001181385.1_P47_London_12_VIM_2_12_12

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Seq: CVWN01000353.1 Pseudomonas aeruginosa genome assembly P47_London_12_VIM_2_12_12, contig P47_London_12_VIM_2_12_12_contig359, whole genome shotgun sequence (42487 bp)
Overview 1 RT 1: 8682-18987 bp 2 RT 2: 35245-42110 bp Neighborhood of RT #1 [8682, 18989] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [35245, 42110] PRK10770 LptD RVT-GII YkfC HNH Feature: gene Location: 8682-9803 bp Ori: CRR07651.1 Feature: domain Description: COG3177 Location: 8700-9792 bp Feature: domain Description: COG31 77 Location: 8700-9792 bp Feature: gene Location: 10062-10223 bp Feature: gene Location: 10526-12211 bp Ori: CRR07696.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 10583-10823 bp Feature: domain Description: RVT_N Location: 1 0583-1 0823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10871-11507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0871 -1 1 507 bp Feature: domain Description: GIIM Note: maturase Location: 11561-11792 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 561 -1 1 792 bp Feature: domain Description: HNH Note: nucleases Location: 12044-12182 bp Feature: domain Description: HNH Note: nucleases Location: 1 2044-1 21 82 bp Feature: gene Location: 13292-17029 bp Ori: CRR07716.1 Gene: cph2_8 Feature: domain Description: PBP2_BvgS_HisK_like Location: 13400-14057 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 3400-1 4057 bp Feature: domain Description: PRK09776 Location: 14270-14741 bp Feature: domain Description: PRK09776 Location: 1 4270-1 4741 bp Feature: domain Description: PAS Location: 14798-15323 bp Feature: domain Description: PAS Location: 1 4798-1 5323 bp Feature: domain Description: PRK10060 Location: 15335-16979 bp Feature: domain Description: PRK1 0060 Location: 1 5335-1 6979 bp Feature: gene Location: 17136-18989 bp Ori: CRR07739.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 17148-18987 bp Feature: domain Description: PRK05658 Location: 1 71 48-1 8987 bp Feature: gene Location: 35245-36537 bp Ori: CRR08155.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 35335-36529 bp Feature: domain Description: PRK1 0770 Location: 35335-36529 bp Feature: gene Location: 36518-39289 bp Ori: CRR08178.1 Gene: lptD Feature: domain Description: LptD Location: 36713-39275 bp Feature: domain Description: LptD Location: 3671 3-39275 bp Feature: gene Location: 39422-40732 bp Ori: CRR08202.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39425-40001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39425-40001 bp Feature: domain Description: YkfC Location: 40211-40364 bp Feature: domain Description: YkfC Location: 4021 1 -40364 bp Feature: domain Description: HNH Note: nucleases Location: 40538-40676 bp Feature: domain Description: HNH Note: nucleases Location: 40538-40676 bp Feature: gene Location: 41976-42110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344)

Seq: CVWN01000167.1 Pseudomonas aeruginosa genome assembly P47_London_12_VIM_2_12_12, contig P47_London_12_VIM_2_12_12_contig167, whole genome shotgun sequence (4821 bp)
Overview 1 RT 1: 119-4582 bp Neighborhood of RT #1 [119, 4779] RVT-GII GIIM CHD Feature: gene Location: 119-286 bp Feature: gene Location: 779-2047 bp Ori: CRQ79647.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992 -1649 bp Feature: domain Description: GIIM Note: maturase Location: 1727-1949 bp Feature: domain Description: GIIM Note: maturase Location: 172 7-1949 bp Feature: gene Location: 2779-2958 bp Feature: gene Location: 4042-4779 bp Ori: CRQ79666.1 Feature: domain Description: CHD Location: 4093-4582 bp Feature: domain Description: CHD Location: 4093-4582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVWN01000221.1 Pseudomonas aeruginosa genome assembly P47_London_12_VIM_2_12_12, contig P47_London_12_VIM_2_12_12_contig221, whole genome shotgun sequence (51309 bp)
Overview 1 RT 1: 4792-10481 bp Neighborhood of RT #1 [4792, 10481] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 4792-5628 bp Ori: CRQ85157.1 Feature: domain Description: HDOD Location: 4795-5623 bp Feature: domain Description: HDOD Location: 4795-5623 bp Feature: gene Location: 5729-6673 bp Ori: CRQ85169.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 5738-6638 bp Feature: domain Description: YgfZ Location: 573 8-663 8 bp Feature: gene Location: 8396-9715 bp Ori: CRQ85181.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8399-8975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 99-8975 bp Feature: domain Description: YkfC Location: 9173-9329 bp Feature: domain Description: YkfC Location: 9173 -93 29 bp Feature: domain Description: HNH Note: nucleases Location: 9512-9650 bp Feature: domain Description: HNH Note: nucleases Location: 9512-9650 bp Feature: gene Location: 9791-10045 bp Ori: CRQ85192.1 Gene: cptB Feature: domain Description: SdhE Location: 9797-10037 bp Feature: domain Description: SdhE Location: 9797-1003 7 bp Feature: gene Location: 10029-10481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVWN01000372.1 Pseudomonas aeruginosa genome assembly P47_London_12_VIM_2_12_12, contig P47_London_12_VIM_2_12_12_contig378, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRR29831.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRR29854.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-284 14 bp Feature: gene Location: 29463-32483 bp Ori: CRR29871.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-304 29 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRR29908.1 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)