myRT

myRT report for GCA_001181405.1_P48_London_17_VIM_2_01_13

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Seq: CVWT01000133.1 Pseudomonas aeruginosa genome assembly P48_London_17_VIM_2_01_13, contig P48_London_17_VIM_2_01_13_contig183, whole genome shotgun sequence (35921 bp)
Overview 1 RT 1: 25755-33927 bp Neighborhood of RT #1 [25755, 34121] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25755-27626 bp Ori: CRR80297.1 Feature: domain Description: DUF262 Location: 25803-26571 bp Feature: domain Description: DUF262 Location: 25803-26571 bp Feature: gene Location: 27630-28493 bp Ori: CRR80306.1 Feature: domain Description: YeeA Location: 27654-28359 bp Feature: domain Description: YeeA Location: 27654-28359 bp Feature: gene Location: 29408-32428 bp Ori: CRR80316.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29903-30374 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29903-30374 bp Feature: gene Location: 32425-32982 bp Feature: gene Location: 32982-34121 bp Ori: CRR80337.1 Feature: domain Description: AAA_21 Location: 33054-33123 bp Feature: domain Description: AAA_21 Location: 33054-331 23 bp Feature: domain Description: AAA_21 Location: 33597-33927 bp Feature: domain Description: AAA_21 Location: 33597-33927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVWT01000134.1 Pseudomonas aeruginosa genome assembly P48_London_17_VIM_2_01_13, contig P48_London_17_VIM_2_01_13_contig184, whole genome shotgun sequence (10161 bp)
Overview 1 RT 1: 35-5675 bp Neighborhood of RT #1 [35, 5872] DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 35-676 bp Ori: CRR80406.1 Feature: domain Description: DUF772 Location: 185-380 bp Feature: domain Description: DUF772 Location: 185-380 bp Feature: gene Location: 1065-2333 bp Ori: CRR80415.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1278-1935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 78-1935 bp Feature: domain Description: GIIM Note: maturase Location: 2013-2235 bp Feature: domain Description: GIIM Note: maturase Location: 2 013-2 2 35 bp Feature: gene Location: 3065-3244 bp Feature: gene Location: 4328-5872 bp Ori: CRR80437.1 Feature: domain Description: CHD Location: 4544-4958 bp Feature: domain Description: CHD Location: 4544-4958 bp Feature: domain Description: CHD Location: 5186-5675 bp Feature: domain Description: CHD Location: 5186-5675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVWT01000967.1 Pseudomonas aeruginosa genome assembly P48_London_17_VIM_2_01_13, contig P48_London_17_VIM_2_01_13_contig1023, whole genome shotgun sequence (46986 bp)
Overview 1 RT 1: 115-7643 bp Neighborhood of RT #1 [115, 7657] LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 115-759 bp Feature: gene Location: 752-3523 bp Ori: CRS26403.1 Gene: lptD Feature: domain Description: LptD Location: 947-3509 bp Feature: domain Description: LptD Location: 947-3 509 bp Feature: gene Location: 3656-4966 bp Ori: CRS26404.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3659-4235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 659-423 5 bp Feature: domain Description: YkfC Location: 4445-4598 bp Feature: domain Description: YkfC Location: 4445-4598 bp Feature: domain Description: HNH Note: nucleases Location: 4772-4910 bp Feature: domain Description: HNH Note: nucleases Location: 4772-4910 bp Feature: gene Location: 6210-6344 bp Feature: gene Location: 6641-7657 bp Ori: CRS26408.1 Feature: domain Description: COG3178 Location: 6644-7643 bp Feature: domain Description: COG3 178 Location: 6644-7643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LptD (COG1452), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVWT01000151.1 Pseudomonas aeruginosa genome assembly P48_London_17_VIM_2_01_13, contig P48_London_17_VIM_2_01_13_contig201, whole genome shotgun sequence (9429 bp)
Overview 1 RT 1: 1201-9346 bp Neighborhood of RT #1 [1201, 9348] RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 1201-1362 bp Feature: gene Location: 1665-3350 bp Ori: CRR82933.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 1722-1962 bp Feature: domain Description: RVT_N Location: 1722-1962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2010-2646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2010-264 6 bp Feature: domain Description: GIIM Note: maturase Location: 2700-2931 bp Feature: domain Description: GIIM Note: maturase Location: 2700-2931 bp Feature: domain Description: HNH Note: nucleases Location: 3183-3321 bp Feature: domain Description: HNH Note: nucleases Location: 3183-3321 bp Feature: gene Location: 4431-8168 bp Ori: CRR82945.1 Gene: cph2_5 Feature: domain Description: PBP2_BvgS_HisK_like Location: 4539-5196 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 4 539-5196 bp Feature: domain Description: PRK09776 Location: 5409-5880 bp Feature: domain Description: PRK09776 Location: 54 09-5880 bp Feature: domain Description: PAS Location: 5937-6462 bp Feature: domain Description: PAS Location: 5937-64 62 bp Feature: domain Description: PRK10060 Location: 6474-8118 bp Feature: domain Description: PRK10060 Location: 64 74 -8118 bp Feature: gene Location: 8275-9348 bp Ori: CRR82956.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 8284-9346 bp Feature: domain Description: PRK05658 Location: 8284 -934 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: CVWT01000421.1 Pseudomonas aeruginosa genome assembly P48_London_17_VIM_2_01_13, contig P48_London_17_VIM_2_01_13_contig471, whole genome shotgun sequence (26589 bp)
Overview 1 RT 1: 5339-11028 bp Neighborhood of RT #1 [5339, 11028] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 5339-6175 bp Ori: CRS13635.1 Feature: domain Description: HDOD Location: 5342-6170 bp Feature: domain Description: HDOD Location: 5 342-6170 bp Feature: gene Location: 6276-7220 bp Ori: CRS13641.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 6285-7185 bp Feature: domain Description: YgfZ Location: 6285 -7185 bp Feature: gene Location: 8943-10262 bp Ori: CRS13648.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8946-9522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8946-95 22 bp Feature: domain Description: YkfC Location: 9720-9876 bp Feature: domain Description: YkfC Location: 9720-9876 bp Feature: domain Description: HNH Note: nucleases Location: 10059-10197 bp Feature: domain Description: HNH Note: nucleases Location: 1005 9-10197 bp Feature: gene Location: 10338-10592 bp Ori: CRS13656.1 Gene: cptB Feature: domain Description: SdhE Location: 10344-10584 bp Feature: domain Description: SdhE Location: 10344-105 84 bp Feature: gene Location: 10576-11028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)