myRT

myRT report for GCA_001181445.1_P50_London_9_VIM_2_01_13

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Seq: CVWP01000147.1 Pseudomonas aeruginosa genome assembly P50_London_9_VIM_2_01_13, contig P50_London_9_VIM_2_01_13_contig157, whole genome shotgun sequence (35976 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRQ92541.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRQ92551.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-2841 4 bp Feature: gene Location: 29463-32483 bp Ori: CRQ92559.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRQ92574.1 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 331 09-331 78 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVWP01000170.1 Pseudomonas aeruginosa genome assembly P50_London_9_VIM_2_01_13, contig P50_London_9_VIM_2_01_13_contig180, whole genome shotgun sequence (201350 bp)
Overview 1 RT 1: 585-4103 bp Neighborhood of RT #1 [585, 4114] RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 585-2270 bp Ori: CRR09469.1 Gene: ltrA_4 Feature: domain Description: RVT_N Location: 642-882 bp Feature: domain Description: RVT_N Location: 642 -882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1566 bp Feature: domain Description: GIIM Note: maturase Location: 1620-1851 bp Feature: domain Description: GIIM Note: maturase Location: 162 0-1851 bp Feature: domain Description: HNH Note: nucleases Location: 2103-2241 bp Feature: domain Description: HNH Note: nucleases Location: 2 103-2 2 41 bp Feature: gene Location: 2573-2734 bp Feature: gene Location: 2993-4114 bp Ori: CRR09507.1 Feature: domain Description: COG3177 Location: 3011-4103 bp Feature: domain Description: COG3177 Location: 3011-4103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )

Seq: CVWP01000141.1 Pseudomonas aeruginosa genome assembly P50_London_9_VIM_2_01_13, contig P50_London_9_VIM_2_01_13_contig151, whole genome shotgun sequence (43895 bp)
Overview 1 RT 1: 4561-11371 bp Neighborhood of RT #1 [4561, 11568] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4561-5388 bp Ori: CRQ89875.1 Gene: glnQ_4 Feature: domain Description: ABC_phnC Location: 4591-5305 bp Feature: domain Description: ABC_phnC Location: 4591-53 05 bp Feature: gene Location: 5731-6372 bp Ori: CRQ89885.1 Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: gene Location: 6761-8029 bp Ori: CRQ89893.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-763 1 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: domain Description: GIIM Note: maturase Location: 7709-793 1 bp Feature: gene Location: 8761-8940 bp Feature: gene Location: 10024-11568 bp Ori: CRQ89912.1 Feature: domain Description: CHD Location: 10240-10654 bp Feature: domain Description: CHD Location: 10240-10654 bp Feature: domain Description: CHD Location: 10882-11371 bp Feature: domain Description: CHD Location: 10882-113 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVWP01000011.1 Pseudomonas aeruginosa genome assembly P50_London_9_VIM_2_01_13, contig P50_London_9_VIM_2_01_13_contig11, whole genome shotgun sequence (160629 bp)
Overview 1 RT 1: 85705-91394 bp Neighborhood of RT #1 [85705, 91394] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 85705-86541 bp Ori: CRQ21535.1 Feature: domain Description: HDOD Location: 85708-86536 bp Feature: domain Description: HDOD Location: 85708-86536 bp Feature: gene Location: 86642-87586 bp Ori: CRQ21553.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 86651-87551 bp Feature: domain Description: YgfZ Location: 86651-87551 bp Feature: gene Location: 89309-90628 bp Ori: CRQ21569.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89312-89888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89312-89888 bp Feature: domain Description: YkfC Location: 90086-90242 bp Feature: domain Description: YkfC Location: 90086-9024 2 bp Feature: domain Description: HNH Note: nucleases Location: 90425-90563 bp Feature: domain Description: HNH Note: nucleases Location: 904 25-90563 bp Feature: gene Location: 90704-90958 bp Ori: CRQ21588.1 Gene: cptB Feature: domain Description: SdhE Location: 90710-90950 bp Feature: domain Description: SdhE Location: 90710-90950 bp Feature: gene Location: 90942-91394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVWP01000119.1 Pseudomonas aeruginosa genome assembly P50_London_9_VIM_2_01_13, contig P50_London_9_VIM_2_01_13_contig129, whole genome shotgun sequence (80676 bp)
Overview 1 RT 1: 22567-30731 bp Neighborhood of RT #1 [22567, 30745] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 22567-23859 bp Ori: CRQ72390.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 22657-23851 bp Feature: domain Description: PRK10770 Location: 2265 7-2385 1 bp Feature: gene Location: 23840-26611 bp Ori: CRQ72400.1 Gene: lptD Feature: domain Description: LptD Location: 24035-26597 bp Feature: domain Description: LptD Location: 24035 -265 97 bp Feature: gene Location: 26744-28054 bp Ori: CRQ72409.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26747-27323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26747-27323 bp Feature: domain Description: YkfC Location: 27533-27686 bp Feature: domain Description: YkfC Location: 275 33-27686 bp Feature: domain Description: HNH Note: nucleases Location: 27860-27998 bp Feature: domain Description: HNH Note: nucleases Location: 27860-27998 bp Feature: gene Location: 29298-29432 bp Feature: gene Location: 29729-30745 bp Ori: CRQ72430.1 Feature: domain Description: COG3178 Location: 29732-30731 bp Feature: domain Description: COG3178 Location: 29732-30731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )