myRT

myRT report for GCA_001181505.1_E7_London_9_VIM_2_02_13

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Seq: CVWB01000343.1 Pseudomonas aeruginosa genome assembly E7_London_9_VIM_2_02_13, contig E7_London_9_VIM_2_02_13_contig346, whole genome shotgun sequence (31604 bp)
Overview 1 RT 1: 3993-10803 bp Neighborhood of RT #1 [3993, 11000] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 3993-4820 bp Ori: CRQ11805.1 Gene: glnQ_4 Feature: domain Description: ABC_phnC Location: 4023-4737 bp Feature: domain Description: ABC_phnC Location: 4023-4737 bp Feature: gene Location: 5163-5804 bp Ori: CRQ11828.1 Feature: domain Description: DUF772 Location: 5313-5508 bp Feature: domain Description: DUF772 Location: 531 3-5508 bp Feature: gene Location: 6193-7461 bp Ori: CRQ11845.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6406-7063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6406-7063 bp Feature: domain Description: GIIM Note: maturase Location: 7141-7363 bp Feature: domain Description: GIIM Note: maturase Location: 71 41 -7363 bp Feature: gene Location: 8193-8372 bp Feature: gene Location: 9456-11000 bp Ori: CRQ11894.1 Feature: domain Description: CHD Location: 9672-10086 bp Feature: domain Description: CHD Location: 9672-1 0086 bp Feature: domain Description: CHD Location: 10314-10803 bp Feature: domain Description: CHD Location: 1 031 4-1 0803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVWB01000233.1 Pseudomonas aeruginosa genome assembly E7_London_9_VIM_2_02_13, contig E7_London_9_VIM_2_02_13_contig233, whole genome shotgun sequence (62429 bp)
Overview 1 RT 1: 40659-46348 bp Neighborhood of RT #1 [40659, 46348] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 40659-41495 bp Ori: CRP36150.1 Feature: domain Description: HDOD Location: 40662-41490 bp Feature: domain Description: HDOD Location: 40662 -41490 bp Feature: gene Location: 41596-42540 bp Ori: CRP36174.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 41605-42505 bp Feature: domain Description: YgfZ Location: 41605-42 505 bp Feature: gene Location: 44263-45582 bp Ori: CRP36206.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44266-44842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442 66-44842 bp Feature: domain Description: YkfC Location: 45040-45196 bp Feature: domain Description: YkfC Location: 45040-45196 bp Feature: domain Description: HNH Note: nucleases Location: 45379-45517 bp Feature: domain Description: HNH Note: nucleases Location: 45379-45517 bp Feature: gene Location: 45658-45912 bp Ori: CRP36237.1 Gene: cptB Feature: domain Description: SdhE Location: 45664-45904 bp Feature: domain Description: SdhE Location: 45664-45904 bp Feature: gene Location: 45896-46348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVWB01000166.1 Pseudomonas aeruginosa genome assembly E7_London_9_VIM_2_02_13, contig E7_London_9_VIM_2_02_13_contig166, whole genome shotgun sequence (68960 bp)
Overview 1 RT 1: 20144-28308 bp Neighborhood of RT #1 [20144, 28322] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 20144-21436 bp Ori: CRP10290.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 20234-21428 bp Feature: domain Description: PRK10770 Location: 2023 4-21428 bp Feature: gene Location: 21417-24188 bp Ori: CRP10323.1 Gene: lptD Feature: domain Description: LptD Location: 21612-24174 bp Feature: domain Description: LptD Location: 21612-24174 bp Feature: gene Location: 24321-25631 bp Ori: CRP10351.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24324-24900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243 24-24900 bp Feature: domain Description: YkfC Location: 25110-25263 bp Feature: domain Description: YkfC Location: 25110-25263 bp Feature: domain Description: HNH Note: nucleases Location: 25437-25575 bp Feature: domain Description: HNH Note: nucleases Location: 2543 7-25575 bp Feature: gene Location: 26875-27009 bp Feature: gene Location: 27306-28322 bp Ori: CRP10411.1 Feature: domain Description: COG3178 Location: 27309-28308 bp Feature: domain Description: COG3 178 Location: 273 09-283 08 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVWB01000108.1 Pseudomonas aeruginosa genome assembly E7_London_9_VIM_2_02_13, contig E7_London_9_VIM_2_02_13_contig108, whole genome shotgun sequence (7691 bp)
Overview 1 RT 1: 1803-4462 bp Neighborhood of RT #1 [1803, 6516] AAA_21 AAA_21 RVT-UG5 Feature: gene Location: 1803-2942 bp Ori: CRO82129.1 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 1875-194 4 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_21 Location: 24 18-274 8 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRO82182.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4 4 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5

Seq: CVWB01000164.1 Pseudomonas aeruginosa genome assembly E7_London_9_VIM_2_02_13, contig E7_London_9_VIM_2_02_13_contig164, whole genome shotgun sequence (3933 bp)
Overview 1 RT 1: 584-2733 bp Neighborhood of RT #1 [584, 2733] RVT_N RVT-GII GIIM HNH Feature: gene Location: 584-2269 bp Ori: CRP09417.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 641-881 bp Feature: domain Description: RVT_N Location: 641-881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 929-1565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 929-15 65 bp Feature: domain Description: GIIM Note: maturase Location: 1619-1850 bp Feature: domain Description: GIIM Note: maturase Location: 1619-185 0 bp Feature: domain Description: HNH Note: nucleases Location: 2102-2240 bp Feature: domain Description: HNH Note: nucleases Location: 2102-2240 bp Feature: gene Location: 2572-2733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)