myRT

myRT report for GCA_001181585.1_P53_London_9_VIM_2_02_13

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Seq: CWER01000099.1 Pseudomonas aeruginosa genome assembly P53_London_9_VIM_2_02_13, contig P53_London_9_VIM_2_02_13_contig99, whole genome shotgun sequence (80507 bp)
Overview 1 RT 1: 49763-57933 bp Neighborhood of RT #1 [49763, 57941] COG3178 RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 49763-50779 bp Ori: CRW87845.1 Feature: domain Description: COG3178 Location: 49766-50765 bp Feature: domain Description: COG31 78 Location: 49766-50765 bp Feature: gene Location: 51076-51210 bp Feature: gene Location: 52454-53764 bp Ori: CRW87854.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52457-53033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52457-53033 bp Feature: domain Description: YkfC Location: 53243-53396 bp Feature: domain Description: YkfC Location: 53243-53396 bp Feature: domain Description: HNH Note: nucleases Location: 53570-53708 bp Feature: domain Description: HNH Note: nucleases Location: 53570-53708 bp Feature: gene Location: 53897-56668 bp Ori: CRW87861.1 Gene: lptD Feature: domain Description: LptD Location: 54092-56654 bp Feature: domain Description: LptD Location: 54092-56654 bp Feature: gene Location: 56649-57941 bp Ori: CRW87868.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 56739-57933 bp Feature: domain Description: PRK1 0770 Location: 56739-57933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: CWER01000327.1 Pseudomonas aeruginosa genome assembly P53_London_9_VIM_2_02_13, contig P53_London_9_VIM_2_02_13_contig334, whole genome shotgun sequence (35947 bp)
Overview 1 RT 1: 1803-9114 bp Neighborhood of RT #1 [1803, 10169] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1803-2942 bp Ori: CRX14700.1 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_2 1 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_2 1 Location: 2 418-2 748 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRX14715.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: gene Location: 7431-8294 bp Ori: CRX14723.1 Feature: domain Description: YeeA Location: 7455-8160 bp Feature: domain Description: YeeA Location: 7455-8160 bp Feature: gene Location: 8298-10169 bp Ori: CRX14729.1 Feature: domain Description: DUF262 Location: 8346-9114 bp Feature: domain Description: DUF2 62 Location: 8346-9114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: CWER01000210.1 Pseudomonas aeruginosa genome assembly P53_London_9_VIM_2_02_13, contig P53_London_9_VIM_2_02_13_contig210, whole genome shotgun sequence (60732 bp)
Overview 1 RT 1: 583-4101 bp Neighborhood of RT #1 [583, 4112] RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 583-2268 bp Ori: CRW99350.1 Gene: ltrA_4 Feature: domain Description: RVT_N Location: 640-880 bp Feature: domain Description: RVT_N Location: 640-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928-1564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928-1564 bp Feature: domain Description: GIIM Note: maturase Location: 1618-1849 bp Feature: domain Description: GIIM Note: maturase Location: 1618-1849 bp Feature: domain Description: HNH Note: nucleases Location: 2101-2239 bp Feature: domain Description: HNH Note: nucleases Location: 2101-223 9 bp Feature: gene Location: 2571-2732 bp Feature: gene Location: 2991-4112 bp Ori: CRW99364.1 Feature: domain Description: COG3177 Location: 3009-4101 bp Feature: domain Description: COG3 177 Location: 3 009-4101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )

Seq: CWER01000044.1 Pseudomonas aeruginosa genome assembly P53_London_9_VIM_2_02_13, contig P53_London_9_VIM_2_02_13_contig44, whole genome shotgun sequence (92981 bp)
Overview 1 RT 1: 21884-27568 bp Neighborhood of RT #1 [21884, 27573] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 21884-22336 bp Feature: gene Location: 22320-22574 bp Ori: CRW78809.1 Gene: cptB Feature: domain Description: SdhE Location: 22326-22566 bp Feature: domain Description: SdhE Location: 22326-22566 bp Feature: gene Location: 22650-23969 bp Ori: CRW78818.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22653-23229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22653-23229 bp Feature: domain Description: YkfC Location: 23427-23583 bp Feature: domain Description: YkfC Location: 234 27-23583 bp Feature: domain Description: HNH Note: nucleases Location: 23766-23904 bp Feature: domain Description: HNH Note: nucleases Location: 23766-23904 bp Feature: gene Location: 25692-26636 bp Ori: CRW78830.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 25701-26601 bp Feature: domain Description: YgfZ Location: 25701-26601 bp Feature: gene Location: 26737-27573 bp Ori: CRW78843.1 Feature: domain Description: HDOD Location: 26740-27568 bp Feature: domain Description: HDOD Location: 2674 0-27568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CWER01000060.1 Pseudomonas aeruginosa genome assembly P53_London_9_VIM_2_02_13, contig P53_London_9_VIM_2_02_13_contig60, whole genome shotgun sequence (14164 bp)
Overview 1 RT 1: 20-5660 bp Neighborhood of RT #1 [20, 5857] DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 20-661 bp Ori: CRW82433.1 Feature: domain Description: DUF772 Location: 170-365 bp Feature: domain Description: DUF772 Location: 170-365 bp Feature: gene Location: 1050-2318 bp Ori: CRW82439.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: gene Location: 3050-3229 bp Feature: gene Location: 4313-5857 bp Ori: CRW82452.1 Feature: domain Description: CHD Location: 4529-4943 bp Feature: domain Description: CHD Location: 45 29-4943 bp Feature: domain Description: CHD Location: 5171-5660 bp Feature: domain Description: CHD Location: 5 171-5 660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)