myRT

myRT report for GCA_001181625.1_E8_London_17_VIM_2_04_13

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Seq: CVUW01000163.1 Pseudomonas aeruginosa genome assembly E8_London_17_VIM_2_04_13, contig E8_London_17_VIM_2_04_13_contig200, whole genome shotgun sequence (88366 bp)
Overview 1 RT 1: 40831-46515 bp Neighborhood of RT #1 [40831, 46520] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40831-41283 bp Feature: gene Location: 41267-41521 bp Ori: CRO28813.1 Gene: cptB Feature: domain Description: SdhE Location: 41273-41513 bp Feature: domain Description: SdhE Location: 41 273-41 51 3 bp Feature: gene Location: 41597-42916 bp Ori: CRO28850.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41600-42176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 600-421 76 bp Feature: domain Description: YkfC Location: 42374-42530 bp Feature: domain Description: YkfC Location: 42374-42530 bp Feature: domain Description: HNH Note: nucleases Location: 42713-42851 bp Feature: domain Description: HNH Note: nucleases Location: 4271 3-42851 bp Feature: gene Location: 44639-45583 bp Ori: CRO28886.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 44648-45548 bp Feature: domain Description: YgfZ Location: 44648-45548 bp Feature: gene Location: 45684-46520 bp Ori: CRO28935.1 Feature: domain Description: HDOD Location: 45687-46515 bp Feature: domain Description: HDOD Location: 45687-4651 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CVUW01000203.1 Pseudomonas aeruginosa genome assembly E8_London_17_VIM_2_04_13, contig E8_London_17_VIM_2_04_13_contig240, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRP62449.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF2 62 Location: 2 5858-2 662 6 bp Feature: gene Location: 27685-28548 bp Ori: CRP62482.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 2 7709-2 8414 bp Feature: gene Location: 29463-32483 bp Ori: CRP62510.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 9958-3042 9 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRP62578.1 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_2 1 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_2 1 Location: 33652 -33982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVUW01000110.1 Pseudomonas aeruginosa genome assembly E8_London_17_VIM_2_04_13, contig E8_London_17_VIM_2_04_13_contig110, whole genome shotgun sequence (104116 bp)
Overview 1 RT 1: 19432-29737 bp 2 RT 2: 45995-54159 bp Neighborhood of RT #1 [19432, 29739] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [45995, 54173] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 19432-20553 bp Ori: CRN67191.1 Feature: domain Description: COG3177 Location: 19450-20542 bp Feature: domain Description: COG3 177 Location: 19450-20542 bp Feature: gene Location: 20812-20973 bp Feature: gene Location: 21276-22961 bp Ori: CRN67261.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 21333-21573 bp Feature: domain Description: RVT_N Location: 213 3 3 -21573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21621-22257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21621-22257 bp Feature: domain Description: GIIM Note: maturase Location: 22311-22542 bp Feature: domain Description: GIIM Note: maturase Location: 223 11-22542 bp Feature: domain Description: HNH Note: nucleases Location: 22794-22932 bp Feature: domain Description: HNH Note: nucleases Location: 22794-2293 2 bp Feature: gene Location: 24042-27779 bp Ori: CRN67293.1 Gene: cph2_5 Feature: domain Description: PBP2_BvgS_HisK_like Location: 24150-24807 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 24150-24807 bp Feature: domain Description: PRK09776 Location: 25020-25491 bp Feature: domain Description: PRK09776 Location: 25020-25491 bp Feature: domain Description: PAS Location: 25548-26073 bp Feature: domain Description: PAS Location: 25548-26073 bp Feature: domain Description: PRK10060 Location: 26085-27729 bp Feature: domain Description: PRK10060 Location: 26085-27729 bp Feature: gene Location: 27886-29739 bp Ori: CRN67329.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 27898-29737 bp Feature: domain Description: PRK05658 Location: 27898-2973 7 bp Feature: gene Location: 45995-47287 bp Ori: CRN67900.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 46085-47279 bp Feature: domain Description: PRK10770 Location: 46085-47279 bp Feature: gene Location: 47268-50039 bp Ori: CRN67940.1 Gene: lptD Feature: domain Description: LptD Location: 47463-50025 bp Feature: domain Description: LptD Location: 47463 -50025 bp Feature: gene Location: 50172-51482 bp Ori: CRN67974.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50175-50751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50175-50751 bp Feature: domain Description: YkfC Location: 50961-51114 bp Feature: domain Description: YkfC Location: 50961-51114 bp Feature: domain Description: HNH Note: nucleases Location: 51288-51426 bp Feature: domain Description: HNH Note: nucleases Location: 51288-51426 bp Feature: gene Location: 52726-52860 bp Feature: gene Location: 53157-54173 bp Ori: CRN68042.1 Feature: domain Description: COG3178 Location: 53160-54159 bp Feature: domain Description: COG3 178 Location: 53 160-54159 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVUW01000001.1 Pseudomonas aeruginosa genome assembly E8_London_17_VIM_2_04_13, contig E8_London_17_VIM_2_04_13_CONTIG1, whole genome shotgun sequence (16240 bp)
Overview 1 RT 1: 4561-11371 bp Neighborhood of RT #1 [4561, 11568] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4561-5388 bp Ori: CRN33321.1 Gene: glnQ_1 Feature: domain Description: ABC_phnC Location: 4591-5305 bp Feature: domain Description: ABC_phnC Location: 4 591-5305 bp Feature: gene Location: 5731-6372 bp Ori: CRN33333.1 Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: gene Location: 6761-8029 bp Ori: CRN33344.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974 -7631 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: gene Location: 8761-8940 bp Feature: gene Location: 10024-11568 bp Ori: CRN33370.1 Feature: domain Description: CHD Location: 10240-10654 bp Feature: domain Description: CHD Location: 1024 0-10654 bp Feature: domain Description: CHD Location: 10882-11371 bp Feature: domain Description: CHD Location: 10882-11371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)