myRT

myRT report for GCA_001181645.1_E9_London_17_VIM_2_04_13

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Seq: CVUN01000161.1 Pseudomonas aeruginosa genome assembly E9_London_17_VIM_2_04_13, contig E9_London_17_VIM_2_04_13_contig173, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRO33748.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRO33783.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-2841 4 bp Feature: gene Location: 29463-32483 bp Ori: CRO33812.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRO33889.1 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 331 09-331 78 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVUN01000114.1 Pseudomonas aeruginosa genome assembly E9_London_17_VIM_2_04_13, contig E9_London_17_VIM_2_04_13_contig121, whole genome shotgun sequence (116922 bp)
Overview 1 RT 1: 32238-42543 bp 2 RT 2: 58801-66965 bp Neighborhood of RT #1 [32238, 42545] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [58801, 66979] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 32238-33359 bp Ori: CRN31197.1 Feature: domain Description: COG3177 Location: 32256-33348 bp Feature: domain Description: COG3177 Location: 32 2 56-33348 bp Feature: gene Location: 33618-33779 bp Feature: gene Location: 34082-35767 bp Ori: CRN31223.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 34139-34379 bp Feature: domain Description: RVT_N Location: 34139-34379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34427-35063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3442 7-35063 bp Feature: domain Description: GIIM Note: maturase Location: 35117-35348 bp Feature: domain Description: GIIM Note: maturase Location: 35117-35348 bp Feature: domain Description: HNH Note: nucleases Location: 35600-35738 bp Feature: domain Description: HNH Note: nucleases Location: 35600-35738 bp Feature: gene Location: 36848-40585 bp Ori: CRN31233.1 Gene: cph2_4 Feature: domain Description: PBP2_BvgS_HisK_like Location: 36956-37613 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 36956-37613 bp Feature: domain Description: PRK09776 Location: 37826-38297 bp Feature: domain Description: PRK09776 Location: 3782 6-382 97 bp Feature: domain Description: PAS Location: 38354-38879 bp Feature: domain Description: PAS Location: 38354-38879 bp Feature: domain Description: PRK10060 Location: 38891-40535 bp Feature: domain Description: PRK10060 Location: 38891-40535 bp Feature: gene Location: 40692-42545 bp Ori: CRN31242.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 40704-42543 bp Feature: domain Description: PRK05658 Location: 40704-42 543 bp Feature: gene Location: 58801-60093 bp Ori: CRN31450.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 58891-60085 bp Feature: domain Description: PRK10770 Location: 58891-60085 bp Feature: gene Location: 60074-62845 bp Ori: CRN31462.1 Gene: lptD Feature: domain Description: LptD Location: 60269-62831 bp Feature: domain Description: LptD Location: 602 69-62 831 bp Feature: gene Location: 62978-64288 bp Ori: CRN31473.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62981-63557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 981-63557 bp Feature: domain Description: YkfC Location: 63767-63920 bp Feature: domain Description: YkfC Location: 63767-6392 0 bp Feature: domain Description: HNH Note: nucleases Location: 64094-64232 bp Feature: domain Description: HNH Note: nucleases Location: 64094-642 32 bp Feature: gene Location: 65532-65666 bp Feature: gene Location: 65963-66979 bp Ori: CRN31492.1 Feature: domain Description: COG3178 Location: 65966-66965 bp Feature: domain Description: COG3178 Location: 65966-66965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVUN01000128.1 Pseudomonas aeruginosa genome assembly E9_London_17_VIM_2_04_13, contig E9_London_17_VIM_2_04_13_contig140, whole genome shotgun sequence (88370 bp)
Overview 1 RT 1: 40835-46519 bp Neighborhood of RT #1 [40835, 46524] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40835-41287 bp Feature: gene Location: 41271-41525 bp Ori: CRN52978.1 Gene: cptB Feature: domain Description: SdhE Location: 41277-41517 bp Feature: domain Description: SdhE Location: 41277-41517 bp Feature: gene Location: 41601-42920 bp Ori: CRN53000.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41604-42180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41604-42180 bp Feature: domain Description: YkfC Location: 42378-42534 bp Feature: domain Description: YkfC Location: 423 78-4253 4 bp Feature: domain Description: HNH Note: nucleases Location: 42717-42855 bp Feature: domain Description: HNH Note: nucleases Location: 42717-42855 bp Feature: gene Location: 44643-45587 bp Ori: CRN53018.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 44652-45552 bp Feature: domain Description: YgfZ Location: 44652-45552 bp Feature: gene Location: 45688-46524 bp Ori: CRN53042.1 Feature: domain Description: HDOD Location: 45691-46519 bp Feature: domain Description: HDOD Location: 45691-46519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CVUN01000156.1 Pseudomonas aeruginosa genome assembly E9_London_17_VIM_2_04_13, contig E9_London_17_VIM_2_04_13_contig168, whole genome shotgun sequence (43900 bp)
Overview 1 RT 1: 4561-11371 bp Neighborhood of RT #1 [4561, 11568] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4561-5388 bp Ori: CRO18475.1 Gene: glnQ_4 Feature: domain Description: ABC_phnC Location: 4591-5305 bp Feature: domain Description: ABC_phnC Location: 4 591-5305 bp Feature: gene Location: 5731-6372 bp Ori: CRO18502.1 Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: gene Location: 6761-8029 bp Ori: CRO18540.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974 -7631 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: gene Location: 8761-8940 bp Feature: gene Location: 10024-11568 bp Ori: CRO18625.1 Feature: domain Description: CHD Location: 10240-10654 bp Feature: domain Description: CHD Location: 1024 0-10654 bp Feature: domain Description: CHD Location: 10882-11371 bp Feature: domain Description: CHD Location: 10882-11371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)