myRT

myRT report for GCA_001181685.1_P55_London_26_VIM_2_05_13

Download annotations/find similar RTs

Seq: CVWX01000132.1 Pseudomonas aeruginosa genome assembly P55_London_26_VIM_2_05_13, contig P55_London_26_VIM_2_05_13_contig144, whole genome shotgun sequence (43897 bp)
Overview 1 RT 1: 4753-11370 bp Neighborhood of RT #1 [4753, 11567] LysR DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4753-5622 bp Ori: CRS06324.1 Gene: cmpR_5 Feature: domain Description: LysR Location: 4771-5575 bp Feature: domain Description: LysR Location: 4771 -5575 bp Feature: gene Location: 5730-6371 bp Ori: CRS06338.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRS06352.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRS06379.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 1 0239-1 0653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 1 0881 -1 1 370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVWX01000140.1 Pseudomonas aeruginosa genome assembly P55_London_26_VIM_2_05_13, contig P55_London_26_VIM_2_05_13_contig152, whole genome shotgun sequence (36026 bp)
Overview 1 RT 1: 1851-9162 bp Neighborhood of RT #1 [1851, 10217] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1851-2990 bp Ori: CRS12771.1 Feature: domain Description: AAA_21 Location: 1923-1992 bp Feature: domain Description: AAA_2 1 Location: 192 3-1992 bp Feature: domain Description: AAA_21 Location: 2466-2796 bp Feature: domain Description: AAA_2 1 Location: 2 466-2 796 bp Feature: gene Location: 2990-3547 bp Feature: gene Location: 3544-6564 bp Ori: CRS12791.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4039-4510 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4039-4510 bp Feature: gene Location: 7479-8342 bp Ori: CRS12801.1 Feature: domain Description: YeeA Location: 7503-8208 bp Feature: domain Description: YeeA Location: 7503-82 08 bp Feature: gene Location: 8346-10217 bp Ori: CRS12810.1 Feature: domain Description: DUF262 Location: 8394-9162 bp Feature: domain Description: DUF2 62 Location: 8394-9162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: CVWX01000094.1 Pseudomonas aeruginosa genome assembly P55_London_26_VIM_2_05_13, contig P55_London_26_VIM_2_05_13_contig106, whole genome shotgun sequence (108460 bp)
Overview 1 RT 1: 32621-38310 bp Neighborhood of RT #1 [32621, 38310] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 32621-33457 bp Ori: CRR38225.1 Feature: domain Description: HDOD Location: 32624-33452 bp Feature: domain Description: HDOD Location: 3 2624-3 3 452 bp Feature: gene Location: 33558-34502 bp Ori: CRR38250.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 33567-34467 bp Feature: domain Description: YgfZ Location: 3 3 567-3 4467 bp Feature: gene Location: 36225-37544 bp Ori: CRR38271.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36228-36804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6228-3 6804 bp Feature: domain Description: YkfC Location: 37002-37158 bp Feature: domain Description: YkfC Location: 3 7002-3 7158 bp Feature: domain Description: HNH Note: nucleases Location: 37341-37479 bp Feature: domain Description: HNH Note: nucleases Location: 3 73 41-3 7479 bp Feature: gene Location: 37620-37874 bp Ori: CRR38295.1 Gene: cptB Feature: domain Description: SdhE Location: 37626-37866 bp Feature: domain Description: SdhE Location: 3 7626-3 7866 bp Feature: gene Location: 37858-38310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVWX01000128.1 Pseudomonas aeruginosa genome assembly P55_London_26_VIM_2_05_13, contig P55_London_26_VIM_2_05_13_contig140, whole genome shotgun sequence (281806 bp)
Overview 1 RT 1: 49944-58114 bp 2 RT 2: 74378-84674 bp Neighborhood of RT #1 [49944, 58122] COG3178 RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74378, 84685] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 49944-50960 bp Ori: CRS00332.1 Feature: domain Description: COG3178 Location: 49947-50946 bp Feature: domain Description: COG3178 Location: 4 994 7-5094 6 bp Feature: gene Location: 51257-51391 bp Feature: gene Location: 52635-53945 bp Ori: CRS00357.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52638-53214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52638-53214 bp Feature: domain Description: YkfC Location: 53424-53577 bp Feature: domain Description: YkfC Location: 534 24 -53577 bp Feature: domain Description: HNH Note: nucleases Location: 53751-53889 bp Feature: domain Description: HNH Note: nucleases Location: 53751-53889 bp Feature: gene Location: 54078-56849 bp Ori: CRS00372.1 Gene: lptD Feature: domain Description: LptD Location: 54273-56835 bp Feature: domain Description: LptD Location: 54 273-56835 bp Feature: gene Location: 56830-58122 bp Ori: CRS00384.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 56920-58114 bp Feature: domain Description: PRK10770 Location: 56920-58114 bp Feature: gene Location: 74378-76231 bp Ori: CRS00671.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 74390-76229 bp Feature: domain Description: PRK05658 Location: 74 390-76229 bp Feature: gene Location: 76338-80075 bp Ori: CRS00686.1 Gene: cph2_5 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76446-77103 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 764 4 6-77103 bp Feature: domain Description: PRK09776 Location: 77316-77787 bp Feature: domain Description: PRK09776 Location: 77316-77787 bp Feature: domain Description: PAS Location: 77844-78369 bp Feature: domain Description: PAS Location: 7784 4 -78369 bp Feature: domain Description: PRK10060 Location: 78381-80025 bp Feature: domain Description: PRK10060 Location: 78381-80025 bp Feature: gene Location: 81156-82841 bp Ori: CRS00702.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 81213-81453 bp Feature: domain Description: RVT_N Location: 81213-814 53 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81501-82137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81501-82137 bp Feature: domain Description: GIIM Note: maturase Location: 82191-82422 bp Feature: domain Description: GIIM Note: maturase Location: 82191-824 22 bp Feature: domain Description: HNH Note: nucleases Location: 82674-82812 bp Feature: domain Description: HNH Note: nucleases Location: 82674 -82812 bp Feature: gene Location: 83144-83305 bp Feature: gene Location: 83564-84685 bp Ori: CRS00731.1 Feature: domain Description: COG3177 Location: 83582-84674 bp Feature: domain Description: COG3177 Location: 83582-84 674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), GIIM (pfam08388), COG3177 (Fic family protein )