myRT

myRT report for GCA_001181725.1_E11_London_26_VIM_2_06_13

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Seq: CVVM01000156.1 Pseudomonas aeruginosa genome assembly E11_London_26_VIM_2_06_13, contig E11_London_26_VIM_2_06_13_contig166, whole genome shotgun sequence (36026 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRP25286.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRP25315.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-2841 4 bp Feature: gene Location: 29463-32483 bp Ori: CRP25342.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRP25388.1 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 331 09-331 78 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVVM01000150.1 Pseudomonas aeruginosa genome assembly E11_London_26_VIM_2_06_13, contig E11_London_26_VIM_2_06_13_contig160, whole genome shotgun sequence (43898 bp)
Overview 1 RT 1: 4561-11371 bp Neighborhood of RT #1 [4561, 11568] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4561-5388 bp Ori: CRP17176.1 Gene: glnQ_3 Feature: domain Description: ABC_phnC Location: 4591-5305 bp Feature: domain Description: ABC_phnC Location: 4591-5305 bp Feature: gene Location: 5731-6372 bp Ori: CRP17208.1 Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: gene Location: 6761-8029 bp Ori: CRP17237.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: gene Location: 8761-8940 bp Feature: gene Location: 10024-11568 bp Ori: CRP17288.1 Feature: domain Description: CHD Location: 10240-10654 bp Feature: domain Description: CHD Location: 102 40-10654 bp Feature: domain Description: CHD Location: 10882-11371 bp Feature: domain Description: CHD Location: 10882 -11371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVVM01000136.1 Pseudomonas aeruginosa genome assembly E11_London_26_VIM_2_06_13, contig E11_London_26_VIM_2_06_13_contig146, whole genome shotgun sequence (281792 bp)
Overview 1 RT 1: 49944-58114 bp 2 RT 2: 74378-84674 bp Neighborhood of RT #1 [49944, 58122] COG3178 RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74378, 84685] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 49944-50960 bp Ori: CRO83102.1 Feature: domain Description: COG3178 Location: 49947-50946 bp Feature: domain Description: COG3 178 Location: 49947-50946 bp Feature: gene Location: 51257-51391 bp Feature: gene Location: 52635-53945 bp Ori: CRO83153.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52638-53214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5263 8-53 214 bp Feature: domain Description: YkfC Location: 53424-53577 bp Feature: domain Description: YkfC Location: 53 424-53 577 bp Feature: domain Description: HNH Note: nucleases Location: 53751-53889 bp Feature: domain Description: HNH Note: nucleases Location: 53 751-53 889 bp Feature: gene Location: 54078-56849 bp Ori: CRO83184.1 Gene: lptD Feature: domain Description: LptD Location: 54273-56835 bp Feature: domain Description: LptD Location: 54273 -5683 5 bp Feature: gene Location: 56830-58122 bp Ori: CRO83215.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 56920-58114 bp Feature: domain Description: PRK10770 Location: 56920-58114 bp Feature: gene Location: 74378-76231 bp Ori: CRO83802.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 74390-76229 bp Feature: domain Description: PRK05658 Location: 743 90-76229 bp Feature: gene Location: 76338-80075 bp Ori: CRO83835.1 Gene: cph2_5 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76446-77103 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76446-77103 bp Feature: domain Description: PRK09776 Location: 77316-77787 bp Feature: domain Description: PRK09776 Location: 773 16-77787 bp Feature: domain Description: PAS Location: 77844-78369 bp Feature: domain Description: PAS Location: 77844-783 69 bp Feature: domain Description: PRK10060 Location: 78381-80025 bp Feature: domain Description: PRK10060 Location: 783 81-80025 bp Feature: gene Location: 81156-82841 bp Ori: CRO83867.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 81213-81453 bp Feature: domain Description: RVT_N Location: 81213 -81453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81501-82137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81501-8213 7 bp Feature: domain Description: GIIM Note: maturase Location: 82191-82422 bp Feature: domain Description: GIIM Note: maturase Location: 82191-82422 bp Feature: domain Description: HNH Note: nucleases Location: 82674-82812 bp Feature: domain Description: HNH Note: nucleases Location: 82674-82812 bp Feature: gene Location: 83144-83305 bp Feature: gene Location: 83564-84685 bp Ori: CRO83945.1 Feature: domain Description: COG3177 Location: 83582-84674 bp Feature: domain Description: COG3 177 Location: 83 582-84674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: CVVM01000066.1 Pseudomonas aeruginosa genome assembly E11_London_26_VIM_2_06_13, contig E11_London_26_VIM_2_06_13_contig66, whole genome shotgun sequence (133913 bp)
Overview 1 RT 1: 41847-47536 bp Neighborhood of RT #1 [41847, 47536] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 41847-42683 bp Ori: CRN89750.1 Feature: domain Description: HDOD Location: 41850-42678 bp Feature: domain Description: HDOD Location: 4 1850-4 2678 bp Feature: gene Location: 42784-43728 bp Ori: CRN89770.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 42793-43693 bp Feature: domain Description: YgfZ Location: 4 2793-4 3693 bp Feature: gene Location: 45451-46770 bp Ori: CRN89802.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45454-46030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 54 54 -4 6030 bp Feature: domain Description: YkfC Location: 46228-46384 bp Feature: domain Description: YkfC Location: 4 6228-4 6384 bp Feature: domain Description: HNH Note: nucleases Location: 46567-46705 bp Feature: domain Description: HNH Note: nucleases Location: 4 6567-4 6705 bp Feature: gene Location: 46846-47100 bp Ori: CRN89835.1 Gene: cptB Feature: domain Description: SdhE Location: 46852-47092 bp Feature: domain Description: SdhE Location: 4 6852-4 7092 bp Feature: gene Location: 47084-47536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)