myRT

myRT report for GCA_001181745.1_E12_London_26_VIM_2_06_13

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Seq: CVUX01000099.1 Pseudomonas aeruginosa genome assembly E12_London_26_VIM_2_06_13, contig E12_London_26_VIM_2_06_13_contig99, whole genome shotgun sequence (104114 bp)
Overview 1 RT 1: 19430-29735 bp 2 RT 2: 45993-54157 bp Neighborhood of RT #1 [19430, 29737] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [45993, 54171] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 19430-20551 bp Ori: CRN66436.1 Feature: domain Description: COG3177 Location: 19448-20540 bp Feature: domain Description: COG31 77 Location: 1 9448-20540 bp Feature: gene Location: 20810-20971 bp Feature: gene Location: 21274-22959 bp Ori: CRN66481.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 21331-21571 bp Feature: domain Description: RVT_N Location: 21 331 -21 571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21619-22255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 61 9-22255 bp Feature: domain Description: GIIM Note: maturase Location: 22309-22540 bp Feature: domain Description: GIIM Note: maturase Location: 22309-22540 bp Feature: domain Description: HNH Note: nucleases Location: 22792-22930 bp Feature: domain Description: HNH Note: nucleases Location: 22792-22930 bp Feature: gene Location: 24040-27777 bp Ori: CRN66502.1 Gene: cph2_2 Feature: domain Description: PBP2_BvgS_HisK_like Location: 24148-24805 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 241 48-24805 bp Feature: domain Description: PRK09776 Location: 25018-25489 bp Feature: domain Description: PRK09776 Location: 2501 8-25489 bp Feature: domain Description: PAS Location: 25546-26071 bp Feature: domain Description: PAS Location: 25546-26071 bp Feature: domain Description: PRK10060 Location: 26083-27727 bp Feature: domain Description: PRK1 0060 Location: 26083-27727 bp Feature: gene Location: 27884-29737 bp Ori: CRN66523.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 27896-29735 bp Feature: domain Description: PRK05658 Location: 27896-29735 bp Feature: gene Location: 45993-47285 bp Ori: CRN67046.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 46083-47277 bp Feature: domain Description: PRK1 0770 Location: 46083-47277 bp Feature: gene Location: 47266-50037 bp Ori: CRN67072.1 Gene: lptD Feature: domain Description: LptD Location: 47461-50023 bp Feature: domain Description: LptD Location: 47461 -50023 bp Feature: gene Location: 50170-51480 bp Ori: CRN67096.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50173-50749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 73-50749 bp Feature: domain Description: YkfC Location: 50959-51112 bp Feature: domain Description: YkfC Location: 50959-51 1 1 2 bp Feature: domain Description: HNH Note: nucleases Location: 51286-51424 bp Feature: domain Description: HNH Note: nucleases Location: 51 286-51 424 bp Feature: gene Location: 52724-52858 bp Feature: gene Location: 53155-54171 bp Ori: CRN67214.1 Feature: domain Description: COG3178 Location: 53158-54157 bp Feature: domain Description: COG31 78 Location: 531 58-541 57 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVUX01000214.1 Pseudomonas aeruginosa genome assembly E12_London_26_VIM_2_06_13, contig E12_London_26_VIM_2_06_13_contig238, whole genome shotgun sequence (37915 bp)
Overview 1 RT 1: 119-5389 bp Neighborhood of RT #1 [119, 5586] RVT-GII GIIM CHD CHD Feature: gene Location: 119-286 bp Feature: gene Location: 779-2047 bp Ori: CRP35887.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992 -1649 bp Feature: domain Description: GIIM Note: maturase Location: 1727-1949 bp Feature: domain Description: GIIM Note: maturase Location: 172 7-1949 bp Feature: gene Location: 2779-2958 bp Feature: gene Location: 4042-5586 bp Ori: CRP35955.1 Feature: domain Description: CHD Location: 4258-4672 bp Feature: domain Description: CHD Location: 42 58-4672 bp Feature: domain Description: CHD Location: 4900-5389 bp Feature: domain Description: CHD Location: 4900-5389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVUX01000216.1 Pseudomonas aeruginosa genome assembly E12_London_26_VIM_2_06_13, contig E12_London_26_VIM_2_06_13_contig240, whole genome shotgun sequence (36014 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRP38924.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRP38957.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-28414 bp Feature: gene Location: 29463-32483 bp Ori: CRP38980.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-3 0429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRP39035.1 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 3 3 109-3 3 178 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 3 3 652-3 3 982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVUX01000066.1 Pseudomonas aeruginosa genome assembly E12_London_26_VIM_2_06_13, contig E12_London_26_VIM_2_06_13_contig66, whole genome shotgun sequence (117564 bp)
Overview 1 RT 1: 41847-47536 bp Neighborhood of RT #1 [41847, 47536] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 41847-42683 bp Ori: CRN58666.1 Feature: domain Description: HDOD Location: 41850-42678 bp Feature: domain Description: HDOD Location: 4 1850-4 2678 bp Feature: gene Location: 42784-43728 bp Ori: CRN58682.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 42793-43693 bp Feature: domain Description: YgfZ Location: 4 2793-4 3693 bp Feature: gene Location: 45451-46770 bp Ori: CRN58697.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45454-46030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 54 54 -4 6030 bp Feature: domain Description: YkfC Location: 46228-46384 bp Feature: domain Description: YkfC Location: 4 6228-4 6384 bp Feature: domain Description: HNH Note: nucleases Location: 46567-46705 bp Feature: domain Description: HNH Note: nucleases Location: 4 6567-4 6705 bp Feature: gene Location: 46846-47100 bp Ori: CRN58713.1 Gene: cptB Feature: domain Description: SdhE Location: 46852-47092 bp Feature: domain Description: SdhE Location: 4 6852-4 7092 bp Feature: gene Location: 47084-47536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)