myRT

myRT report for GCA_001181785.1_E14_London_26_VIM_2_06_13

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Seq: CWGG01000146.1 Pseudomonas aeruginosa genome assembly E14_London_26_VIM_2_06_13, contig E14_London_26_VIM_2_06_13_contig165, whole genome shotgun sequence (43895 bp)
Overview 1 RT 1: 4561-11371 bp Neighborhood of RT #1 [4561, 11568] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4561-5388 bp Ori: CRX10210.1 Gene: glnQ_4 Feature: domain Description: ABC_phnC Location: 4591-5305 bp Feature: domain Description: ABC_phnC Location: 4591 -5305 bp Feature: gene Location: 5731-6372 bp Ori: CRX10218.1 Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: domain Description: DUF772 Location: 5881 -6076 bp Feature: gene Location: 6761-8029 bp Ori: CRX10226.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: gene Location: 8761-8940 bp Feature: gene Location: 10024-11568 bp Ori: CRX10239.1 Feature: domain Description: CHD Location: 10240-10654 bp Feature: domain Description: CHD Location: 1 0240-1 0654 bp Feature: domain Description: CHD Location: 10882-11371 bp Feature: domain Description: CHD Location: 1 0882-1 1 371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CWGG01000111.1 Pseudomonas aeruginosa genome assembly E14_London_26_VIM_2_06_13, contig E14_London_26_VIM_2_06_13_contig130, whole genome shotgun sequence (104106 bp)
Overview 1 RT 1: 19422-29727 bp 2 RT 2: 45985-54149 bp Neighborhood of RT #1 [19422, 29729] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [45985, 54163] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 19422-20543 bp Ori: CRW88854.1 Feature: domain Description: COG3177 Location: 19440-20532 bp Feature: domain Description: COG3177 Location: 19440-2 0532 bp Feature: gene Location: 20802-20963 bp Feature: gene Location: 21266-22951 bp Ori: CRW88866.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 21323-21563 bp Feature: domain Description: RVT_N Location: 2 132 3-2 1563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21611-22247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1611-2 2 2 47 bp Feature: domain Description: GIIM Note: maturase Location: 22301-22532 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 301-2 2 532 bp Feature: domain Description: HNH Note: nucleases Location: 22784-22922 bp Feature: domain Description: HNH Note: nucleases Location: 2 2 784-2 2 92 2 bp Feature: gene Location: 24032-27769 bp Ori: CRW88872.1 Gene: cph2_6 Feature: domain Description: PBP2_BvgS_HisK_like Location: 24140-24797 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 4140-2 4797 bp Feature: domain Description: PRK09776 Location: 25010-25481 bp Feature: domain Description: PRK09776 Location: 2 5010-2 5481 bp Feature: domain Description: PAS Location: 25538-26063 bp Feature: domain Description: PAS Location: 2 5538-2 6063 bp Feature: domain Description: PRK10060 Location: 26075-27719 bp Feature: domain Description: PRK10060 Location: 2 6075-2 7719 bp Feature: gene Location: 27876-29729 bp Ori: CRW88880.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 27888-29727 bp Feature: domain Description: PRK05658 Location: 2 7888-2 972 7 bp Feature: gene Location: 45985-47277 bp Ori: CRW89012.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 46075-47269 bp Feature: domain Description: PRK10770 Location: 46075-472 69 bp Feature: gene Location: 47258-50029 bp Ori: CRW89019.1 Gene: lptD Feature: domain Description: LptD Location: 47453-50015 bp Feature: domain Description: LptD Location: 47453-50015 bp Feature: gene Location: 50162-51472 bp Ori: CRW89025.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50165-50741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50165-50741 bp Feature: domain Description: YkfC Location: 50951-51104 bp Feature: domain Description: YkfC Location: 50951-51104 bp Feature: domain Description: HNH Note: nucleases Location: 51278-51416 bp Feature: domain Description: HNH Note: nucleases Location: 512 78-51416 bp Feature: gene Location: 52716-52850 bp Feature: gene Location: 53147-54163 bp Ori: CRW89039.1 Feature: domain Description: COG3178 Location: 53150-54149 bp Feature: domain Description: COG3178 Location: 53150-54149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CWGG01000077.1 Pseudomonas aeruginosa genome assembly E14_London_26_VIM_2_06_13, contig E14_London_26_VIM_2_06_13_contig77, whole genome shotgun sequence (133913 bp)
Overview 1 RT 1: 41847-47536 bp Neighborhood of RT #1 [41847, 47536] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 41847-42683 bp Ori: CRW79387.1 Feature: domain Description: HDOD Location: 41850-42678 bp Feature: domain Description: HDOD Location: 41850-42678 bp Feature: gene Location: 42784-43728 bp Ori: CRW79398.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 42793-43693 bp Feature: domain Description: YgfZ Location: 42793 -43 693 bp Feature: gene Location: 45451-46770 bp Ori: CRW79410.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45454-46030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45454-4603 0 bp Feature: domain Description: YkfC Location: 46228-46384 bp Feature: domain Description: YkfC Location: 46228-463 84 bp Feature: domain Description: HNH Note: nucleases Location: 46567-46705 bp Feature: domain Description: HNH Note: nucleases Location: 46567-46705 bp Feature: gene Location: 46846-47100 bp Ori: CRW79422.1 Gene: cptB Feature: domain Description: SdhE Location: 46852-47092 bp Feature: domain Description: SdhE Location: 46852-47092 bp Feature: gene Location: 47084-47536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CWGG01000153.1 Pseudomonas aeruginosa genome assembly E14_London_26_VIM_2_06_13, contig E14_London_26_VIM_2_06_13_contig172, whole genome shotgun sequence (36026 bp)
Overview 1 RT 1: 1851-9162 bp Neighborhood of RT #1 [1851, 10217] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1851-2990 bp Ori: CRX13345.1 Feature: domain Description: AAA_21 Location: 1923-1992 bp Feature: domain Description: AAA_21 Location: 1923-1992 bp Feature: domain Description: AAA_21 Location: 2466-2796 bp Feature: domain Description: AAA_21 Location: 24 66-2796 bp Feature: gene Location: 2990-3547 bp Feature: gene Location: 3544-6564 bp Ori: CRX13360.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4039-4510 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4 039-4 510 bp Feature: gene Location: 7479-8342 bp Ori: CRX13367.1 Feature: domain Description: YeeA Location: 7503-8208 bp Feature: domain Description: YeeA Location: 7503-8208 bp Feature: gene Location: 8346-10217 bp Ori: CRX13375.1 Feature: domain Description: DUF262 Location: 8394-9162 bp Feature: domain Description: DUF262 Location: 8394 -9162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)