myRT

myRT report for GCA_001181865.1_P58_London_29_09_13

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Seq: CVXA01000099.1 Pseudomonas aeruginosa genome assembly P58_London_29_09_13, contig P58_London_29_09_13_contig99, whole genome shotgun sequence (104117 bp)
Overview 1 RT 1: 19433-29738 bp 2 RT 2: 45996-54160 bp Neighborhood of RT #1 [19433, 29740] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [45996, 54174] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 19433-20554 bp Ori: CRR28966.1 Feature: domain Description: COG3177 Location: 19451-20543 bp Feature: domain Description: COG31 77 Location: 1 9451 -20543 bp Feature: gene Location: 20813-20974 bp Feature: gene Location: 21277-22962 bp Ori: CRR29003.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 21334-21574 bp Feature: domain Description: RVT_N Location: 21 334-21 574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21622-22258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 622-22258 bp Feature: domain Description: GIIM Note: maturase Location: 22312-22543 bp Feature: domain Description: GIIM Note: maturase Location: 2231 2-22543 bp Feature: domain Description: HNH Note: nucleases Location: 22795-22933 bp Feature: domain Description: HNH Note: nucleases Location: 22795-22933 bp Feature: gene Location: 24043-27780 bp Ori: CRR29017.1 Gene: cph2_3 Feature: domain Description: PBP2_BvgS_HisK_like Location: 24151-24808 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 241 51 -24808 bp Feature: domain Description: PRK09776 Location: 25021-25492 bp Feature: domain Description: PRK09776 Location: 25021 -25492 bp Feature: domain Description: PAS Location: 25549-26074 bp Feature: domain Description: PAS Location: 25549-26074 bp Feature: domain Description: PRK10060 Location: 26086-27730 bp Feature: domain Description: PRK1 0060 Location: 26086-27730 bp Feature: gene Location: 27887-29740 bp Ori: CRR29031.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 27899-29738 bp Feature: domain Description: PRK05658 Location: 27899-29738 bp Feature: gene Location: 45996-47288 bp Ori: CRR29364.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 46086-47280 bp Feature: domain Description: PRK1 0770 Location: 46086-47280 bp Feature: gene Location: 47269-50040 bp Ori: CRR29388.1 Gene: lptD Feature: domain Description: LptD Location: 47464-50026 bp Feature: domain Description: LptD Location: 47464-50026 bp Feature: gene Location: 50173-51483 bp Ori: CRR29407.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50176-50752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 76-50752 bp Feature: domain Description: YkfC Location: 50962-51115 bp Feature: domain Description: YkfC Location: 50962-51 1 1 5 bp Feature: domain Description: HNH Note: nucleases Location: 51289-51427 bp Feature: domain Description: HNH Note: nucleases Location: 51 289-51 427 bp Feature: gene Location: 52727-52861 bp Feature: gene Location: 53158-54174 bp Ori: CRR29438.1 Feature: domain Description: COG3178 Location: 53161-54160 bp Feature: domain Description: COG31 78 Location: 531 61 -541 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVXA01000110.1 Pseudomonas aeruginosa genome assembly P58_London_29_09_13, contig P58_London_29_09_13_contig121, whole genome shotgun sequence (98244 bp)
Overview 1 RT 1: 51727-57416 bp Neighborhood of RT #1 [51727, 57416] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 51727-52563 bp Ori: CRR44379.1 Feature: domain Description: HDOD Location: 51730-52558 bp Feature: domain Description: HDOD Location: 51730-52 558 bp Feature: gene Location: 52664-53608 bp Ori: CRR44389.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 52673-53573 bp Feature: domain Description: YgfZ Location: 52 673-53573 bp Feature: gene Location: 55331-56650 bp Ori: CRR44406.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55334-55910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55334-55910 bp Feature: domain Description: YkfC Location: 56108-56264 bp Feature: domain Description: YkfC Location: 56108-562 64 bp Feature: domain Description: HNH Note: nucleases Location: 56447-56585 bp Feature: domain Description: HNH Note: nucleases Location: 56447-56585 bp Feature: gene Location: 56726-56980 bp Ori: CRR44422.1 Gene: cptB Feature: domain Description: SdhE Location: 56732-56972 bp Feature: domain Description: SdhE Location: 56732 -56972 bp Feature: gene Location: 56964-57416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVXA01000156.1 Pseudomonas aeruginosa genome assembly P58_London_29_09_13, contig P58_London_29_09_13_contig167, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRR92452.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRR92459.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-28414 bp Feature: gene Location: 29463-32483 bp Ori: CRR92471.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-3 0429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRR92489.1 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 3 3 109-3 3 178 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 3 3 652-3 3 982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVXA01000145.1 Pseudomonas aeruginosa genome assembly P58_London_29_09_13, contig P58_London_29_09_13_contig156, whole genome shotgun sequence (43897 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRR85870.1 Gene: glnQ_4 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4 590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRR85881.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRR85889.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRR85909.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)