myRT

myRT report for GCA_001181885.1_P59_Wales_1_VIM_2_09_13

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Seq: CVXN01000244.1 Pseudomonas aeruginosa genome assembly P59_Wales_1_VIM_2_09_13, contig P59_Wales_1_VIM_2_09_13_contig261, whole genome shotgun sequence (63759 bp)
Overview 1 RT 1: 17237-22926 bp Neighborhood of RT #1 [17237, 22926] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 17237-18073 bp Ori: CRS07574.1 Feature: domain Description: HDOD Location: 17240-18068 bp Feature: domain Description: HDOD Location: 1 7240-1 8068 bp Feature: gene Location: 18174-19118 bp Ori: CRS07584.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 18183-19083 bp Feature: domain Description: YgfZ Location: 1 81 83-1 9083 bp Feature: gene Location: 20841-22160 bp Ori: CRS07594.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20844-21420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20844-21 420 bp Feature: domain Description: YkfC Location: 21618-21774 bp Feature: domain Description: YkfC Location: 21 61 8-21 774 bp Feature: domain Description: HNH Note: nucleases Location: 21957-22095 bp Feature: domain Description: HNH Note: nucleases Location: 21 957-22095 bp Feature: gene Location: 22236-22490 bp Ori: CRS07601.1 Gene: cptB Feature: domain Description: SdhE Location: 22242-22482 bp Feature: domain Description: SdhE Location: 22242-22482 bp Feature: gene Location: 22474-22926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVXN01000261.1 Pseudomonas aeruginosa genome assembly P59_Wales_1_VIM_2_09_13, contig P59_Wales_1_VIM_2_09_13_contig278, whole genome shotgun sequence (43922 bp)
Overview 1 RT 1: 4561-11371 bp Neighborhood of RT #1 [4561, 11568] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4561-5388 bp Ori: CRS17681.1 Gene: glnQ_3 Feature: domain Description: ABC_phnC Location: 4591-5305 bp Feature: domain Description: ABC_phnC Location: 4591-5305 bp Feature: gene Location: 5731-6372 bp Ori: CRS17687.1 Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: gene Location: 6761-8029 bp Ori: CRS17691.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: gene Location: 8761-8940 bp Feature: gene Location: 10024-11568 bp Ori: CRS17701.1 Feature: domain Description: CHD Location: 10240-10654 bp Feature: domain Description: CHD Location: 102 40-10654 bp Feature: domain Description: CHD Location: 10882-11371 bp Feature: domain Description: CHD Location: 10882 -11371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVXN01000302.1 Pseudomonas aeruginosa genome assembly P59_Wales_1_VIM_2_09_13, contig P59_Wales_1_VIM_2_09_13_contig319, whole genome shotgun sequence (19558 bp)
Overview 1 RT 1: 9390-17562 bp Neighborhood of RT #1 [9390, 17756] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 9390-11261 bp Ori: CRS25629.1 Feature: domain Description: DUF262 Location: 9438-10206 bp Feature: domain Description: DUF262 Location: 943 8-10206 bp Feature: gene Location: 11265-12128 bp Ori: CRS25631.1 Feature: domain Description: YeeA Location: 11289-11994 bp Feature: domain Description: YeeA Location: 11289-11994 bp Feature: gene Location: 13043-16063 bp Ori: CRS25633.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13538-14009 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13 53 8-14009 bp Feature: gene Location: 16060-16617 bp Feature: gene Location: 16617-17756 bp Ori: CRS25638.1 Feature: domain Description: AAA_21 Location: 16689-16758 bp Feature: domain Description: AAA_21 Location: 16689-16758 bp Feature: domain Description: AAA_21 Location: 17232-17562 bp Feature: domain Description: AAA_21 Location: 1723 2-17562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVXN01000122.1 Pseudomonas aeruginosa genome assembly P59_Wales_1_VIM_2_09_13, contig P59_Wales_1_VIM_2_09_13_contig122, whole genome shotgun sequence (104105 bp)
Overview 1 RT 1: 19433-29738 bp 2 RT 2: 45996-54160 bp Neighborhood of RT #1 [19433, 29740] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [45996, 54174] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 19433-20554 bp Ori: CRR74266.1 Feature: domain Description: COG3177 Location: 19451-20543 bp Feature: domain Description: COG3177 Location: 194 51-2054 3 bp Feature: gene Location: 20813-20974 bp Feature: gene Location: 21277-22962 bp Ori: CRR74300.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 21334-21574 bp Feature: domain Description: RVT_N Location: 21334 -21574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21622-22258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21622-22258 bp Feature: domain Description: GIIM Note: maturase Location: 22312-22543 bp Feature: domain Description: GIIM Note: maturase Location: 22312-2254 3 bp Feature: domain Description: HNH Note: nucleases Location: 22795-22933 bp Feature: domain Description: HNH Note: nucleases Location: 22795-22933 bp Feature: gene Location: 24043-27780 bp Ori: CRR74316.1 Gene: cph2_5 Feature: domain Description: PBP2_BvgS_HisK_like Location: 24151-24808 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 24 151-24 808 bp Feature: domain Description: PRK09776 Location: 25021-25492 bp Feature: domain Description: PRK09776 Location: 25021-254 92 bp Feature: domain Description: PAS Location: 25549-26074 bp Feature: domain Description: PAS Location: 2554 9-26074 bp Feature: domain Description: PRK10060 Location: 26086-27730 bp Feature: domain Description: PRK10060 Location: 26086-27730 bp Feature: gene Location: 27887-29740 bp Ori: CRR74328.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 27899-29738 bp Feature: domain Description: PRK05658 Location: 27899-29738 bp Feature: gene Location: 45996-47288 bp Ori: CRR74677.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 46086-47280 bp Feature: domain Description: PRK10770 Location: 4 6086-4 7280 bp Feature: gene Location: 47269-50040 bp Ori: CRR74688.1 Gene: lptD Feature: domain Description: LptD Location: 47464-50026 bp Feature: domain Description: LptD Location: 4 74 64 -50026 bp Feature: gene Location: 50173-51483 bp Ori: CRR74701.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50176-50752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50176-50752 bp Feature: domain Description: YkfC Location: 50962-51115 bp Feature: domain Description: YkfC Location: 50962-51115 bp Feature: domain Description: HNH Note: nucleases Location: 51289-51427 bp Feature: domain Description: HNH Note: nucleases Location: 51289-514 27 bp Feature: gene Location: 52727-52861 bp Feature: gene Location: 53158-54174 bp Ori: CRR74720.1 Feature: domain Description: COG3178 Location: 53161-54160 bp Feature: domain Description: COG3178 Location: 53161-54 160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )