myRT

myRT report for GCA_001181905.1_P60_London_6_VIM_2_11_13

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Seq: CVXD01000175.1 Pseudomonas aeruginosa genome assembly P60_London_6_VIM_2_11_13, contig P60_London_6_VIM_2_11_13_contig184, whole genome shotgun sequence (35976 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRS13823.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRS13831.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-2841 4 bp Feature: gene Location: 29463-32483 bp Ori: CRS13836.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRS13848.1 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 331 09-331 78 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVXD01000148.1 Pseudomonas aeruginosa genome assembly P60_London_6_VIM_2_11_13, contig P60_London_6_VIM_2_11_13_contig157, whole genome shotgun sequence (60739 bp)
Overview 1 RT 1: 585-4103 bp Neighborhood of RT #1 [585, 4114] RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 585-2270 bp Ori: CRR94441.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 642-882 bp Feature: domain Description: RVT_N Location: 642 -882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1566 bp Feature: domain Description: GIIM Note: maturase Location: 1620-1851 bp Feature: domain Description: GIIM Note: maturase Location: 162 0-1851 bp Feature: domain Description: HNH Note: nucleases Location: 2103-2241 bp Feature: domain Description: HNH Note: nucleases Location: 2 103-2 2 41 bp Feature: gene Location: 2573-2734 bp Feature: gene Location: 2993-4114 bp Ori: CRR94471.1 Feature: domain Description: COG3177 Location: 3011-4103 bp Feature: domain Description: COG3177 Location: 3011-4103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )

Seq: CVXD01000011.1 Pseudomonas aeruginosa genome assembly P60_London_6_VIM_2_11_13, contig P60_London_6_VIM_2_11_13_contig11, whole genome shotgun sequence (160629 bp)
Overview 1 RT 1: 69236-74920 bp Neighborhood of RT #1 [69236, 74925] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 69236-69688 bp Feature: gene Location: 69672-69926 bp Ori: CRR16050.1 Gene: cptB Feature: domain Description: SdhE Location: 69678-69918 bp Feature: domain Description: SdhE Location: 69678-69918 bp Feature: gene Location: 70002-71321 bp Ori: CRR16069.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70005-70581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70005-70581 bp Feature: domain Description: YkfC Location: 70779-70935 bp Feature: domain Description: YkfC Location: 70779-7093 5 bp Feature: domain Description: HNH Note: nucleases Location: 71118-71256 bp Feature: domain Description: HNH Note: nucleases Location: 71118-71256 bp Feature: gene Location: 73044-73988 bp Ori: CRR16094.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 73053-73953 bp Feature: domain Description: YgfZ Location: 73 053 -73 953 bp Feature: gene Location: 74089-74925 bp Ori: CRR16116.1 Feature: domain Description: HDOD Location: 74092-74920 bp Feature: domain Description: HDOD Location: 74092-74920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CVXD01000161.1 Pseudomonas aeruginosa genome assembly P60_London_6_VIM_2_11_13, contig P60_London_6_VIM_2_11_13_contig170, whole genome shotgun sequence (43954 bp)
Overview 1 RT 1: 4561-11371 bp Neighborhood of RT #1 [4561, 11568] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4561-5388 bp Ori: CRS05774.1 Gene: glnQ_3 Feature: domain Description: ABC_phnC Location: 4591-5305 bp Feature: domain Description: ABC_phnC Location: 4 591-5305 bp Feature: gene Location: 5731-6372 bp Ori: CRS05786.1 Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: gene Location: 6761-8029 bp Ori: CRS05796.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974 -7631 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: gene Location: 8761-8940 bp Feature: gene Location: 10024-11568 bp Ori: CRS05817.1 Feature: domain Description: CHD Location: 10240-10654 bp Feature: domain Description: CHD Location: 1024 0-10654 bp Feature: domain Description: CHD Location: 10882-11371 bp Feature: domain Description: CHD Location: 10882-11371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVXD01000139.1 Pseudomonas aeruginosa genome assembly P60_London_6_VIM_2_11_13, contig P60_London_6_VIM_2_11_13_contig148, whole genome shotgun sequence (80689 bp)
Overview 1 RT 1: 22568-30732 bp Neighborhood of RT #1 [22568, 30746] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 22568-23860 bp Ori: CRR83260.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 22658-23852 bp Feature: domain Description: PRK10770 Location: 2265 8-2385 2 bp Feature: gene Location: 23841-26612 bp Ori: CRR83276.1 Gene: lptD Feature: domain Description: LptD Location: 24036-26598 bp Feature: domain Description: LptD Location: 24036-265 98 bp Feature: gene Location: 26745-28055 bp Ori: CRR83290.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26748-27324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26748-27324 bp Feature: domain Description: YkfC Location: 27534-27687 bp Feature: domain Description: YkfC Location: 275 34-27687 bp Feature: domain Description: HNH Note: nucleases Location: 27861-27999 bp Feature: domain Description: HNH Note: nucleases Location: 27861-27999 bp Feature: gene Location: 29299-29433 bp Feature: gene Location: 29730-30746 bp Ori: CRR83317.1 Feature: domain Description: COG3178 Location: 29733-30732 bp Feature: domain Description: COG3178 Location: 29733-30732 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )