myRT

myRT report for GCA_001181925.1_P61_London_9_VIM_2_11_13

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Seq: CVXB01000171.1 Pseudomonas aeruginosa genome assembly P61_London_9_VIM_2_11_13, contig P61_London_9_VIM_2_11_13_contig179, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 1803-9114 bp Neighborhood of RT #1 [1803, 10169] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1803-2942 bp Ori: CRS13878.1 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 1 875-1 944 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_21 Location: 241 8-2748 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRS13892.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991 -4462 bp Feature: gene Location: 7431-8294 bp Ori: CRS13900.1 Feature: domain Description: YeeA Location: 7455-8160 bp Feature: domain Description: YeeA Location: 7455-81 60 bp Feature: gene Location: 8298-10169 bp Ori: CRS13906.1 Feature: domain Description: DUF262 Location: 8346-9114 bp Feature: domain Description: DUF262 Location: 8346-91 1 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: CVXB01000152.1 Pseudomonas aeruginosa genome assembly P61_London_9_VIM_2_11_13, contig P61_London_9_VIM_2_11_13_contig160, whole genome shotgun sequence (201350 bp)
Overview 1 RT 1: 585-4103 bp Neighborhood of RT #1 [585, 4114] RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 585-2270 bp Ori: CRR99893.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 642-882 bp Feature: domain Description: RVT_N Location: 642 -882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1566 bp Feature: domain Description: GIIM Note: maturase Location: 1620-1851 bp Feature: domain Description: GIIM Note: maturase Location: 162 0-1851 bp Feature: domain Description: HNH Note: nucleases Location: 2103-2241 bp Feature: domain Description: HNH Note: nucleases Location: 2 103-2 2 41 bp Feature: gene Location: 2573-2734 bp Feature: gene Location: 2993-4114 bp Ori: CRR99924.1 Feature: domain Description: COG3177 Location: 3011-4103 bp Feature: domain Description: COG3177 Location: 3011-4103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )

Seq: CVXB01000133.1 Pseudomonas aeruginosa genome assembly P61_London_9_VIM_2_11_13, contig P61_London_9_VIM_2_11_13_contig141, whole genome shotgun sequence (80688 bp)
Overview 1 RT 1: 22567-30731 bp Neighborhood of RT #1 [22567, 30745] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 22567-23859 bp Ori: CRR78960.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 22657-23851 bp Feature: domain Description: PRK10770 Location: 22657-23 851 bp Feature: gene Location: 23840-26611 bp Ori: CRR78979.1 Gene: lptD Feature: domain Description: LptD Location: 24035-26597 bp Feature: domain Description: LptD Location: 2403 5-26597 bp Feature: gene Location: 26744-28054 bp Ori: CRR78999.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26747-27323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26747-273 23 bp Feature: domain Description: YkfC Location: 27533-27686 bp Feature: domain Description: YkfC Location: 2753 3 -27686 bp Feature: domain Description: HNH Note: nucleases Location: 27860-27998 bp Feature: domain Description: HNH Note: nucleases Location: 27860-27998 bp Feature: gene Location: 29298-29432 bp Feature: gene Location: 29729-30745 bp Ori: CRR79026.1 Feature: domain Description: COG3178 Location: 29732-30731 bp Feature: domain Description: COG3 178 Location: 2973 2-3 073 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVXB01000055.1 Pseudomonas aeruginosa genome assembly P61_London_9_VIM_2_11_13, contig P61_London_9_VIM_2_11_13_contig55, whole genome shotgun sequence (132227 bp)
Overview 1 RT 1: 40834-46518 bp Neighborhood of RT #1 [40834, 46523] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40834-41286 bp Feature: gene Location: 41270-41524 bp Ori: CRR31453.1 Gene: cptB Feature: domain Description: SdhE Location: 41276-41516 bp Feature: domain Description: SdhE Location: 4 1276-4 1516 bp Feature: gene Location: 41600-42919 bp Ori: CRR31476.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41603-42179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 1603-4 2179 bp Feature: domain Description: YkfC Location: 42377-42533 bp Feature: domain Description: YkfC Location: 4 2377-4 2533 bp Feature: domain Description: HNH Note: nucleases Location: 42716-42854 bp Feature: domain Description: HNH Note: nucleases Location: 4 2716-4 2854 bp Feature: gene Location: 44642-45586 bp Ori: CRR31504.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 44651-45551 bp Feature: domain Description: YgfZ Location: 4 4 651-4 5551 bp Feature: gene Location: 45687-46523 bp Ori: CRR31534.1 Feature: domain Description: HDOD Location: 45690-46518 bp Feature: domain Description: HDOD Location: 4 5690-4 6518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CVXB01000164.1 Pseudomonas aeruginosa genome assembly P61_London_9_VIM_2_11_13, contig P61_London_9_VIM_2_11_13_contig172, whole genome shotgun sequence (43895 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRS11168.1 Gene: glnQ_5 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 45 90-5 304 bp Feature: gene Location: 5730-6371 bp Ori: CRS11176.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5 880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRS11185.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRS11207.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10239-1065 3 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)