myRT

myRT report for GCA_001181945.1_P64_East_of_England_6_01_14

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Seq: CWFQ01000385.1 Pseudomonas aeruginosa genome assembly P64_East_of_England_6_01_14, contig P64_East_of_England_6_01_14_contig392, whole genome shotgun sequence (37918 bp)
Overview 1 RT 1: 119-5389 bp Neighborhood of RT #1 [119, 5586] RVT-GII GIIM CHD CHD Feature: gene Location: 119-286 bp Feature: gene Location: 779-2047 bp Ori: CRX22338.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1 649 bp Feature: domain Description: GIIM Note: maturase Location: 1727-1949 bp Feature: domain Description: GIIM Note: maturase Location: 1 727-1 949 bp Feature: gene Location: 2779-2958 bp Feature: gene Location: 4042-5586 bp Ori: CRX22348.1 Feature: domain Description: CHD Location: 4258-4672 bp Feature: domain Description: CHD Location: 4258-4672 bp Feature: domain Description: CHD Location: 4900-5389 bp Feature: domain Description: CHD Location: 4900-5389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CWFQ01000365.1 Pseudomonas aeruginosa genome assembly P64_East_of_England_6_01_14, contig P64_East_of_England_6_01_14_contig372, whole genome shotgun sequence (141299 bp)
Overview 1 RT 1: 56626-66931 bp 2 RT 2: 83189-91353 bp Neighborhood of RT #1 [56626, 66933] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [83189, 91367] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 56626-57747 bp Ori: CRX14278.1 Feature: domain Description: COG3177 Location: 56644-57736 bp Feature: domain Description: COG3177 Location: 56644-57736 bp Feature: gene Location: 58006-58167 bp Feature: gene Location: 58470-60155 bp Ori: CRX14293.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 58527-58767 bp Feature: domain Description: RVT_N Location: 5852 7-58767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58815-59451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58815-59451 bp Feature: domain Description: GIIM Note: maturase Location: 59505-59736 bp Feature: domain Description: GIIM Note: maturase Location: 59505-59736 bp Feature: domain Description: HNH Note: nucleases Location: 59988-60126 bp Feature: domain Description: HNH Note: nucleases Location: 59988-6012 6 bp Feature: gene Location: 61236-64973 bp Ori: CRX14301.1 Gene: cph2_6 Feature: domain Description: PBP2_BvgS_HisK_like Location: 61344-62001 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 61344-62 001 bp Feature: domain Description: PRK09776 Location: 62214-62685 bp Feature: domain Description: PRK09776 Location: 62 2 14-62 685 bp Feature: domain Description: PAS Location: 62742-63267 bp Feature: domain Description: PAS Location: 62 742 -632 67 bp Feature: domain Description: PRK10060 Location: 63279-64923 bp Feature: domain Description: PRK10060 Location: 632 79-6492 3 bp Feature: gene Location: 65080-66933 bp Ori: CRX14308.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 65092-66931 bp Feature: domain Description: PRK05658 Location: 65092 -66931 bp Feature: gene Location: 83189-84481 bp Ori: CRX14444.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 83279-84473 bp Feature: domain Description: PRK10770 Location: 832 79-84473 bp Feature: gene Location: 84462-87233 bp Ori: CRX14452.1 Gene: lptD Feature: domain Description: LptD Location: 84657-87219 bp Feature: domain Description: LptD Location: 84657-872 19 bp Feature: gene Location: 87366-88676 bp Ori: CRX14460.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87369-87945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87369-87945 bp Feature: domain Description: YkfC Location: 88155-88308 bp Feature: domain Description: YkfC Location: 88155-88308 bp Feature: domain Description: HNH Note: nucleases Location: 88482-88620 bp Feature: domain Description: HNH Note: nucleases Location: 88482 -8862 0 bp Feature: gene Location: 89920-90054 bp Feature: gene Location: 90351-91367 bp Ori: CRX14477.1 Feature: domain Description: COG3178 Location: 90354-91353 bp Feature: domain Description: COG3178 Location: 90354-91353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CWFQ01000391.1 Pseudomonas aeruginosa genome assembly P64_East_of_England_6_01_14, contig P64_East_of_England_6_01_14_contig398, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 1803-9114 bp Neighborhood of RT #1 [1803, 10169] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1803-2942 bp Ori: CRX24271.1 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRX24281.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 991-4462 bp Feature: gene Location: 7431-8294 bp Ori: CRX24286.1 Feature: domain Description: YeeA Location: 7455-8160 bp Feature: domain Description: YeeA Location: 7455-8160 bp Feature: gene Location: 8298-10169 bp Ori: CRX24291.1 Feature: domain Description: DUF262 Location: 8346-9114 bp Feature: domain Description: DUF262 Location: 83 46-9114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: CWFQ01000110.1 Pseudomonas aeruginosa genome assembly P64_East_of_England_6_01_14, contig P64_East_of_England_6_01_14_contig110, whole genome shotgun sequence (95447 bp)
Overview 1 RT 1: 40835-46519 bp Neighborhood of RT #1 [40835, 46524] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40835-41287 bp Feature: gene Location: 41271-41525 bp Ori: CRW89100.1 Gene: cptB Feature: domain Description: SdhE Location: 41277-41517 bp Feature: domain Description: SdhE Location: 4 1277-4 1517 bp Feature: gene Location: 41601-42920 bp Ori: CRW89107.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41604-42180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 1604 -4 2180 bp Feature: domain Description: YkfC Location: 42378-42534 bp Feature: domain Description: YkfC Location: 4 2378-4 2534 bp Feature: domain Description: HNH Note: nucleases Location: 42717-42855 bp Feature: domain Description: HNH Note: nucleases Location: 4 2717-4 2855 bp Feature: gene Location: 44643-45587 bp Ori: CRW89113.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 44652-45552 bp Feature: domain Description: YgfZ Location: 4 4 652-4 5552 bp Feature: gene Location: 45688-46524 bp Ori: CRW89122.1 Feature: domain Description: HDOD Location: 45691-46519 bp Feature: domain Description: HDOD Location: 4 5691-4 6519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)