myRT

myRT report for GCA_001181965.1_P62_London_9_VIM_2_01_14

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Seq: CWEO01000238.1 Pseudomonas aeruginosa genome assembly P62_London_9_VIM_2_01_14, contig P62_London_9_VIM_2_01_14_contig247, whole genome shotgun sequence (48032 bp)
Overview 1 RT 1: 11882-17571 bp Neighborhood of RT #1 [11882, 17571] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 11882-12718 bp Ori: CRX11649.1 Feature: domain Description: HDOD Location: 11885-12713 bp Feature: domain Description: HDOD Location: 1 1 885-1 271 3 bp Feature: gene Location: 12819-13763 bp Ori: CRX11657.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 12828-13728 bp Feature: domain Description: YgfZ Location: 1 2828-1 3728 bp Feature: gene Location: 15486-16805 bp Ori: CRX11668.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15489-16065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5489-1 6065 bp Feature: domain Description: YkfC Location: 16263-16419 bp Feature: domain Description: YkfC Location: 1 6263-1 641 9 bp Feature: domain Description: HNH Note: nucleases Location: 16602-16740 bp Feature: domain Description: HNH Note: nucleases Location: 1 6602-1 6740 bp Feature: gene Location: 16881-17135 bp Ori: CRX11677.1 Gene: cptB Feature: domain Description: SdhE Location: 16887-17127 bp Feature: domain Description: SdhE Location: 1 6887-1 71 27 bp Feature: gene Location: 17119-17571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CWEO01000249.1 Pseudomonas aeruginosa genome assembly P62_London_9_VIM_2_01_14, contig P62_London_9_VIM_2_01_14_contig258, whole genome shotgun sequence (43895 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRX17309.1 Gene: glnQ_3 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRX17320.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRX17329.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRX17347.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 102 39-10653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CWEO01000009.1 Pseudomonas aeruginosa genome assembly P62_London_9_VIM_2_01_14, contig P62_London_9_VIM_2_01_14_contig9, whole genome shotgun sequence (23534 bp)
Overview 1 RT 1: 584-4102 bp Neighborhood of RT #1 [584, 4113] RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 584-2269 bp Ori: CRW56584.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 641-881 bp Feature: domain Description: RVT_N Location: 641-881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 929-1565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 929-1565 bp Feature: domain Description: GIIM Note: maturase Location: 1619-1850 bp Feature: domain Description: GIIM Note: maturase Location: 1619-1850 bp Feature: domain Description: HNH Note: nucleases Location: 2102-2240 bp Feature: domain Description: HNH Note: nucleases Location: 2102-2240 bp Feature: gene Location: 2572-2733 bp Feature: gene Location: 2992-4113 bp Ori: CRW56628.1 Feature: domain Description: COG3177 Location: 3010-4102 bp Feature: domain Description: COG3 177 Location: 3 010-4102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )

Seq: CWEO01000265.1 Pseudomonas aeruginosa genome assembly P62_London_9_VIM_2_01_14, contig P62_London_9_VIM_2_01_14_contig274, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRX24447.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRX24451.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-284 14 bp Feature: gene Location: 29463-32483 bp Ori: CRX24456.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-304 29 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRX24468.1 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CWEO01000077.1 Pseudomonas aeruginosa genome assembly P62_London_9_VIM_2_01_14, contig P62_London_9_VIM_2_01_14_contig77, whole genome shotgun sequence (82353 bp)
Overview 1 RT 1: 22568-30732 bp Neighborhood of RT #1 [22568, 30746] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 22568-23860 bp Ori: CRW83019.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 22658-23852 bp Feature: domain Description: PRK10770 Location: 2265 8-2385 2 bp Feature: gene Location: 23841-26612 bp Ori: CRW83027.1 Gene: lptD Feature: domain Description: LptD Location: 24036-26598 bp Feature: domain Description: LptD Location: 24036-265 98 bp Feature: gene Location: 26745-28055 bp Ori: CRW83036.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26748-27324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26748-27324 bp Feature: domain Description: YkfC Location: 27534-27687 bp Feature: domain Description: YkfC Location: 275 34-27687 bp Feature: domain Description: HNH Note: nucleases Location: 27861-27999 bp Feature: domain Description: HNH Note: nucleases Location: 27861-27999 bp Feature: gene Location: 29299-29433 bp Feature: gene Location: 29730-30746 bp Ori: CRW83056.1 Feature: domain Description: COG3178 Location: 29733-30732 bp Feature: domain Description: COG3178 Location: 29733-30732 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )