myRT

myRT report for GCA_001181985.1_E15_London_28_01_14

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Seq: CVWF01000732.1 Pseudomonas aeruginosa genome assembly E15_London_28_01_14, contig E15_London_28_01_14_contig732, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRR62982.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRR62994.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-2841 4 bp Feature: gene Location: 29463-32483 bp Ori: CRR63007.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRR63031.1 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 331 09-331 78 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVWF01000140.1 Pseudomonas aeruginosa genome assembly E15_London_28_01_14, contig E15_London_28_01_14_contig140, whole genome shotgun sequence (18367 bp)
Overview 1 RT 1: 3168-9978 bp Neighborhood of RT #1 [3168, 10175] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 3168-3995 bp Ori: CRQ49858.1 Gene: glnQ_1 Feature: domain Description: ABC_phnC Location: 3198-3912 bp Feature: domain Description: ABC_phnC Location: 3198-3912 bp Feature: gene Location: 4338-4979 bp Ori: CRQ49869.1 Feature: domain Description: DUF772 Location: 4488-4683 bp Feature: domain Description: DUF772 Location: 4488-4683 bp Feature: gene Location: 5368-6636 bp Ori: CRQ49880.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5581-6238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5581-62 38 bp Feature: domain Description: GIIM Note: maturase Location: 6316-6538 bp Feature: domain Description: GIIM Note: maturase Location: 6316-6538 bp Feature: gene Location: 7368-7547 bp Feature: gene Location: 8631-10175 bp Ori: CRQ49899.1 Feature: domain Description: CHD Location: 8847-9261 bp Feature: domain Description: CHD Location: 8847-92 61 bp Feature: domain Description: CHD Location: 9489-9978 bp Feature: domain Description: CHD Location: 9489-9978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVWF01000071.1 Pseudomonas aeruginosa genome assembly E15_London_28_01_14, contig E15_London_28_01_14_contig71, whole genome shotgun sequence (23514 bp)
Overview 1 RT 1: 13096-18780 bp Neighborhood of RT #1 [13096, 18785] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 13096-13548 bp Feature: gene Location: 13532-13786 bp Ori: CRQ17737.1 Gene: cptB_1 Feature: domain Description: SdhE Location: 13538-13778 bp Feature: domain Description: SdhE Location: 13 53 8-13 778 bp Feature: gene Location: 13862-15181 bp Ori: CRQ17754.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13865-14441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 865-14441 bp Feature: domain Description: YkfC Location: 14639-14795 bp Feature: domain Description: YkfC Location: 1463 9-14795 bp Feature: domain Description: HNH Note: nucleases Location: 14978-15116 bp Feature: domain Description: HNH Note: nucleases Location: 14978-15116 bp Feature: gene Location: 16904-17848 bp Ori: CRQ17763.1 Gene: ygfZ_1 Feature: domain Description: YgfZ Location: 16913-17813 bp Feature: domain Description: YgfZ Location: 16913 -17813 bp Feature: gene Location: 17949-18785 bp Ori: CRQ17781.1 Feature: domain Description: HDOD Location: 17952-18780 bp Feature: domain Description: HDOD Location: 17952-18780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CVWF01000055.1 Pseudomonas aeruginosa genome assembly E15_London_28_01_14, contig E15_London_28_01_14_contig55, whole genome shotgun sequence (76180 bp)
Overview 1 RT 1: 839-11144 bp 2 RT 2: 27402-35566 bp Neighborhood of RT #1 [839, 11146] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [27402, 35580] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 839-1960 bp Ori: CRQ03796.1 Feature: domain Description: COG3177 Location: 857-1949 bp Feature: domain Description: COG3177 Location: 857-194 9 bp Feature: gene Location: 2219-2380 bp Feature: gene Location: 2683-4368 bp Ori: CRQ03960.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 2740-2980 bp Feature: domain Description: RVT_N Location: 274 0-2980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3028-3664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3028-3664 bp Feature: domain Description: GIIM Note: maturase Location: 3718-3949 bp Feature: domain Description: GIIM Note: maturase Location: 3718-394 9 bp Feature: domain Description: HNH Note: nucleases Location: 4201-4339 bp Feature: domain Description: HNH Note: nucleases Location: 4 201-4 339 bp Feature: gene Location: 5449-9186 bp Ori: CRQ03987.1 Gene: cph2_2 Feature: domain Description: PBP2_BvgS_HisK_like Location: 5557-6214 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5557-6214 bp Feature: domain Description: PRK09776 Location: 6427-6898 bp Feature: domain Description: PRK09776 Location: 64 27-6898 bp Feature: domain Description: PAS Location: 6955-7480 bp Feature: domain Description: PAS Location: 6955-74 80 bp Feature: domain Description: PRK10060 Location: 7492-9136 bp Feature: domain Description: PRK10060 Location: 74 92-9136 bp Feature: gene Location: 9293-11146 bp Ori: CRQ04049.1 Gene: rpoD_1 Feature: domain Description: PRK05658 Location: 9305-11144 bp Feature: domain Description: PRK05658 Location: 9305-1114 4 bp Feature: gene Location: 27402-28694 bp Ori: CRQ04640.1 Gene: surA_3 Feature: domain Description: PRK10770 Location: 27492-28686 bp Feature: domain Description: PRK10770 Location: 274 92-28686 bp Feature: gene Location: 28675-31446 bp Ori: CRQ04746.1 Gene: lptD_3 Feature: domain Description: LptD Location: 28870-31432 bp Feature: domain Description: LptD Location: 28870-314 32 bp Feature: gene Location: 31579-32889 bp Ori: CRQ04766.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31582-32158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31582-32158 bp Feature: domain Description: YkfC Location: 32368-32521 bp Feature: domain Description: YkfC Location: 32368-32521 bp Feature: domain Description: HNH Note: nucleases Location: 32695-32833 bp Feature: domain Description: HNH Note: nucleases Location: 32695-32833 bp Feature: gene Location: 34133-34267 bp Feature: gene Location: 34564-35580 bp Ori: CRQ04809.1 Feature: domain Description: COG3178 Location: 34567-35566 bp Feature: domain Description: COG3178 Location: 34 567-35566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )