myRT

myRT report for GCA_001182005.1_P63_London_25_VIM_2_03_14

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Seq: CWFH01000262.1 Pseudomonas aeruginosa genome assembly P63_London_25_VIM_2_03_14, contig P63_London_25_VIM_2_03_14_contig269, whole genome shotgun sequence (37931 bp)
Overview 1 RT 1: 32346-37813 bp Neighborhood of RT #1 [32346, 37813] CHD CHD RVT-GII GIIM Feature: gene Location: 32346-33890 bp Ori: CRX11453.1 Feature: domain Description: CHD Location: 32562-32976 bp Feature: domain Description: CHD Location: 32562-32976 bp Feature: domain Description: CHD Location: 33204-33693 bp Feature: domain Description: CHD Location: 33204-33693 bp Feature: gene Location: 34974-35153 bp Feature: gene Location: 35885-37153 bp Ori: CRX11468.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36098-36755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36098-36755 bp Feature: domain Description: GIIM Note: maturase Location: 36833-37055 bp Feature: domain Description: GIIM Note: maturase Location: 36833-37055 bp Feature: gene Location: 37646-37813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: CWFH01000302.1 Pseudomonas aeruginosa genome assembly P63_London_25_VIM_2_03_14, contig P63_London_25_VIM_2_03_14_contig309, whole genome shotgun sequence (23542 bp)
Overview 1 RT 1: 19430-22930 bp Neighborhood of RT #1 [19430, 22959] COG3177 RVT_N RVT-GII GIIM HNH Feature: gene Location: 19430-20551 bp Ori: CRX23211.1 Feature: domain Description: COG3177 Location: 19448-20540 bp Feature: domain Description: COG3177 Location: 19448-2 0540 bp Feature: gene Location: 20810-20971 bp Feature: gene Location: 21274-22959 bp Ori: CRX23222.1 Gene: ltrA_4 Feature: domain Description: RVT_N Location: 21331-21571 bp Feature: domain Description: RVT_N Location: 2 1331-2 1571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21619-22255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1619-2 2 2 55 bp Feature: domain Description: GIIM Note: maturase Location: 22309-22540 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 309-2 2 540 bp Feature: domain Description: HNH Note: nucleases Location: 22792-22930 bp Feature: domain Description: HNH Note: nucleases Location: 2 2 792 -2 2 930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: CWFH01000011.1 Pseudomonas aeruginosa genome assembly P63_London_25_VIM_2_03_14, contig P63_London_25_VIM_2_03_14_contig11, whole genome shotgun sequence (111892 bp)
Overview 1 RT 1: 65375-71064 bp Neighborhood of RT #1 [65375, 71064] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 65375-66211 bp Ori: CRW64962.1 Feature: domain Description: HDOD Location: 65378-66206 bp Feature: domain Description: HDOD Location: 653 78-66206 bp Feature: gene Location: 66312-67256 bp Ori: CRW64976.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 66321-67221 bp Feature: domain Description: YgfZ Location: 663 21-67221 bp Feature: gene Location: 68979-70298 bp Ori: CRW64991.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68982-69558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68982-69558 bp Feature: domain Description: YkfC Location: 69756-69912 bp Feature: domain Description: YkfC Location: 69756-69912 bp Feature: domain Description: HNH Note: nucleases Location: 70095-70233 bp Feature: domain Description: HNH Note: nucleases Location: 70095-7023 3 bp Feature: gene Location: 70374-70628 bp Ori: CRW65006.1 Gene: cptB Feature: domain Description: SdhE Location: 70380-70620 bp Feature: domain Description: SdhE Location: 703 80-70620 bp Feature: gene Location: 70612-71064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CWFH01000199.1 Pseudomonas aeruginosa genome assembly P63_London_25_VIM_2_03_14, contig P63_London_25_VIM_2_03_14_contig199, whole genome shotgun sequence (80467 bp)
Overview 1 RT 1: 49723-57893 bp Neighborhood of RT #1 [49723, 57901] COG3178 RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 49723-50739 bp Ori: CRW94312.1 Feature: domain Description: COG3178 Location: 49726-50725 bp Feature: domain Description: COG3178 Location: 4 9726-50725 bp Feature: gene Location: 51036-51170 bp Feature: gene Location: 52414-53724 bp Ori: CRW94327.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52417-52993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 524 17-52993 bp Feature: domain Description: YkfC Location: 53203-53356 bp Feature: domain Description: YkfC Location: 53203-53356 bp Feature: domain Description: HNH Note: nucleases Location: 53530-53668 bp Feature: domain Description: HNH Note: nucleases Location: 53530-53668 bp Feature: gene Location: 53857-56628 bp Ori: CRW94335.1 Gene: lptD Feature: domain Description: LptD Location: 54052-56614 bp Feature: domain Description: LptD Location: 54 052-56614 bp Feature: gene Location: 56609-57901 bp Ori: CRW94352.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 56699-57893 bp Feature: domain Description: PRK10770 Location: 56699-57893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: CWFH01000268.1 Pseudomonas aeruginosa genome assembly P63_London_25_VIM_2_03_14, contig P63_London_25_VIM_2_03_14_contig275, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 1803-9114 bp Neighborhood of RT #1 [1803, 10169] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1803-2942 bp Ori: CRX13655.1 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 1875 -1944 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRX13671.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: gene Location: 7431-8294 bp Ori: CRX13678.1 Feature: domain Description: YeeA Location: 7455-8160 bp Feature: domain Description: YeeA Location: 745 5 -8160 bp Feature: gene Location: 8298-10169 bp Ori: CRX13683.1 Feature: domain Description: DUF262 Location: 8346-9114 bp Feature: domain Description: DUF262 Location: 8346-9114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)