myRT

myRT report for GCA_001182025.1_E16_London_17_VIM_2_04_14

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Seq: CVWG01001291.1 Pseudomonas aeruginosa genome assembly E16_London_17_VIM_2_04_14, contig E16_London_17_VIM_2_04_14_contig1291, whole genome shotgun sequence (15268 bp)
Overview 1 RT 1: 4561-11371 bp Neighborhood of RT #1 [4561, 11568] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4561-5388 bp Ori: CRR55964.1 Gene: glnQ_5 Feature: domain Description: ABC_phnC Location: 4591-5305 bp Feature: domain Description: ABC_phnC Location: 4591 -5305 bp Feature: gene Location: 5731-6372 bp Ori: CRR55979.1 Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: domain Description: DUF772 Location: 5881 -6076 bp Feature: gene Location: 6761-8029 bp Ori: CRR55991.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: gene Location: 8761-8940 bp Feature: gene Location: 10024-11568 bp Ori: CRR56020.1 Feature: domain Description: CHD Location: 10240-10654 bp Feature: domain Description: CHD Location: 1 0240-1 0654 bp Feature: domain Description: CHD Location: 10882-11371 bp Feature: domain Description: CHD Location: 1 0882-1 1 371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVWG01000133.1 Pseudomonas aeruginosa genome assembly E16_London_17_VIM_2_04_14, contig E16_London_17_VIM_2_04_14_contig133, whole genome shotgun sequence (12772 bp)
Overview 1 RT 1: 2576-10740 bp Neighborhood of RT #1 [2576, 10754] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 2576-3868 bp Ori: CRQ31959.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 2666-3860 bp Feature: domain Description: PRK10770 Location: 2 666-3860 bp Feature: gene Location: 3849-6620 bp Ori: CRQ31976.1 Gene: lptD Feature: domain Description: LptD Location: 4044-6606 bp Feature: domain Description: LptD Location: 4044-6606 bp Feature: gene Location: 6753-8063 bp Ori: CRQ31997.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6756-7332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6756-7332 bp Feature: domain Description: YkfC Location: 7542-7695 bp Feature: domain Description: YkfC Location: 7542 -7695 bp Feature: domain Description: HNH Note: nucleases Location: 7869-8007 bp Feature: domain Description: HNH Note: nucleases Location: 7869-8007 bp Feature: gene Location: 9307-9441 bp Feature: gene Location: 9738-10754 bp Ori: CRQ32037.1 Feature: domain Description: COG3178 Location: 9741-10740 bp Feature: domain Description: COG3178 Location: 9741-10740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVWG01001036.1 Pseudomonas aeruginosa genome assembly E16_London_17_VIM_2_04_14, contig E16_London_17_VIM_2_04_14_contig1036, whole genome shotgun sequence (17446 bp)
Overview 1 RT 1: 7278-15450 bp Neighborhood of RT #1 [7278, 15644] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 7278-9149 bp Ori: CRR23102.1 Feature: domain Description: DUF262 Location: 7326-8094 bp Feature: domain Description: DUF262 Location: 73 26-8094 bp Feature: gene Location: 9153-10016 bp Ori: CRR23123.1 Feature: domain Description: YeeA Location: 9177-9882 bp Feature: domain Description: YeeA Location: 9177-9882 bp Feature: gene Location: 10931-13951 bp Ori: CRR23140.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 11426-11897 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 11426-11897 bp Feature: gene Location: 13948-14505 bp Feature: gene Location: 14505-15644 bp Ori: CRR23176.1 Feature: domain Description: AAA_21 Location: 14577-14646 bp Feature: domain Description: AAA_21 Location: 14577-14646 bp Feature: domain Description: AAA_21 Location: 15120-15450 bp Feature: domain Description: AAA_21 Location: 15120-15450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVWG01000752.1 Pseudomonas aeruginosa genome assembly E16_London_17_VIM_2_04_14, contig E16_London_17_VIM_2_04_14_contig752, whole genome shotgun sequence (7021 bp)
Overview 1 RT 1: 2123-4208 bp Neighborhood of RT #1 [2123, 4208] RVT-GII YkfC HNH SdhE Feature: gene Location: 2123-3442 bp Ori: CRQ84600.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2126-2702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2126-2702 bp Feature: domain Description: YkfC Location: 2900-3056 bp Feature: domain Description: YkfC Location: 2900-3056 bp Feature: domain Description: HNH Note: nucleases Location: 3239-3377 bp Feature: domain Description: HNH Note: nucleases Location: 3239-3377 bp Feature: gene Location: 3518-3772 bp Ori: CRQ84609.1 Gene: cptB Feature: domain Description: SdhE Location: 3524-3764 bp Feature: domain Description: SdhE Location: 3524 -3764 bp Feature: gene Location: 3756-4208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVWG01001180.1 Pseudomonas aeruginosa genome assembly E16_London_17_VIM_2_04_14, contig E16_London_17_VIM_2_04_14_contig1180, whole genome shotgun sequence (16406 bp)
Overview 1 RT 1: 1201-10126 bp Neighborhood of RT #1 [1201, 10128] RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 1201-1362 bp Feature: gene Location: 1665-3350 bp Ori: CRR43566.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 1722-1962 bp Feature: domain Description: RVT_N Location: 1722-1962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2010-2646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2010-2646 bp Feature: domain Description: GIIM Note: maturase Location: 2700-2931 bp Feature: domain Description: GIIM Note: maturase Location: 2700-2931 bp Feature: domain Description: HNH Note: nucleases Location: 3183-3321 bp Feature: domain Description: HNH Note: nucleases Location: 3183-3321 bp Feature: gene Location: 4431-8168 bp Ori: CRR43584.1 Gene: cph2_5 Feature: domain Description: PBP2_BvgS_HisK_like Location: 4539-5196 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 45 39-5 196 bp Feature: domain Description: PRK09776 Location: 5409-5880 bp Feature: domain Description: PRK09776 Location: 5 409-5 880 bp Feature: domain Description: PAS Location: 5937-6462 bp Feature: domain Description: PAS Location: 5 937-6462 bp Feature: domain Description: PRK10060 Location: 6474-8118 bp Feature: domain Description: PRK10060 Location: 6474-8118 bp Feature: gene Location: 8275-10128 bp Ori: CRR43598.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 8287-10126 bp Feature: domain Description: PRK05 65 8 Location: 8287-10126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)