myRT

myRT report for GCA_001182945.1_P44_Wales_1_VIM_2_11_12

Download annotations/find similar RTs

Seq: CVWL01000368.1 Pseudomonas aeruginosa genome assembly P44_Wales_1_VIM_2_11_12, contig P44_Wales_1_VIM_2_11_12_contig386, whole genome shotgun sequence (19558 bp)
Overview 1 RT 1: 9390-17562 bp Neighborhood of RT #1 [9390, 17756] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 9390-11261 bp Ori: CRR46407.1 Feature: domain Description: DUF262 Location: 9438-10206 bp Feature: domain Description: DUF262 Location: 9438-1 0206 bp Feature: gene Location: 11265-12128 bp Ori: CRR46446.1 Feature: domain Description: YeeA Location: 11289-11994 bp Feature: domain Description: YeeA Location: 1 1 289-1 1 994 bp Feature: gene Location: 13043-16063 bp Ori: CRR46464.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13538-14009 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 3538-1 4009 bp Feature: gene Location: 16060-16617 bp Feature: gene Location: 16617-17756 bp Ori: CRR46494.1 Feature: domain Description: AAA_21 Location: 16689-16758 bp Feature: domain Description: AAA_21 Location: 1 6689-1 6758 bp Feature: domain Description: AAA_21 Location: 17232-17562 bp Feature: domain Description: AAA_21 Location: 1 7232-1 7562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVWL01000338.1 Pseudomonas aeruginosa genome assembly P44_Wales_1_VIM_2_11_12, contig P44_Wales_1_VIM_2_11_12_contig356, whole genome shotgun sequence (43895 bp)
Overview 1 RT 1: 4561-11371 bp Neighborhood of RT #1 [4561, 11568] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4561-5388 bp Ori: CRR11938.1 Gene: glnQ_4 Feature: domain Description: ABC_phnC Location: 4591-5305 bp Feature: domain Description: ABC_phnC Location: 4591-5305 bp Feature: gene Location: 5731-6372 bp Ori: CRR11960.1 Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: gene Location: 6761-8029 bp Ori: CRR11984.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: gene Location: 8761-8940 bp Feature: gene Location: 10024-11568 bp Ori: CRR12029.1 Feature: domain Description: CHD Location: 10240-10654 bp Feature: domain Description: CHD Location: 102 40-10654 bp Feature: domain Description: CHD Location: 10882-11371 bp Feature: domain Description: CHD Location: 10882 -11371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVWL01000033.1 Pseudomonas aeruginosa genome assembly P44_Wales_1_VIM_2_11_12, contig P44_Wales_1_VIM_2_11_12_contig33, whole genome shotgun sequence (132227 bp)
Overview 1 RT 1: 40834-46518 bp Neighborhood of RT #1 [40834, 46523] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40834-41286 bp Feature: gene Location: 41270-41524 bp Ori: CRQ24043.1 Gene: cptB Feature: domain Description: SdhE Location: 41276-41516 bp Feature: domain Description: SdhE Location: 41276-41516 bp Feature: gene Location: 41600-42919 bp Ori: CRQ24074.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41603-42179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41603 -42179 bp Feature: domain Description: YkfC Location: 42377-42533 bp Feature: domain Description: YkfC Location: 423 77-4253 3 bp Feature: domain Description: HNH Note: nucleases Location: 42716-42854 bp Feature: domain Description: HNH Note: nucleases Location: 42716-42854 bp Feature: gene Location: 44642-45586 bp Ori: CRQ24098.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 44651-45551 bp Feature: domain Description: YgfZ Location: 44651-45551 bp Feature: gene Location: 45687-46523 bp Ori: CRQ24125.1 Feature: domain Description: HDOD Location: 45690-46518 bp Feature: domain Description: HDOD Location: 45690-46518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CVWL01000088.1 Pseudomonas aeruginosa genome assembly P44_Wales_1_VIM_2_11_12, contig P44_Wales_1_VIM_2_11_12_contig88, whole genome shotgun sequence (116867 bp)
Overview 1 RT 1: 32183-42488 bp 2 RT 2: 58746-66910 bp Neighborhood of RT #1 [32183, 42490] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [58746, 66924] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 32183-33304 bp Ori: CRQ42920.1 Feature: domain Description: COG3177 Location: 32201-33293 bp Feature: domain Description: COG3177 Location: 32201-33293 bp Feature: gene Location: 33563-33724 bp Feature: gene Location: 34027-35712 bp Ori: CRQ42954.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 34084-34324 bp Feature: domain Description: RVT_N Location: 34 084 -34 324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34372-35008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 372-35008 bp Feature: domain Description: GIIM Note: maturase Location: 35062-35293 bp Feature: domain Description: GIIM Note: maturase Location: 35062-35293 bp Feature: domain Description: HNH Note: nucleases Location: 35545-35683 bp Feature: domain Description: HNH Note: nucleases Location: 3554 5-35683 bp Feature: gene Location: 36793-40530 bp Ori: CRQ42970.1 Gene: cph2_1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 36901-37558 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 36901-37558 bp Feature: domain Description: PRK09776 Location: 37771-38242 bp Feature: domain Description: PRK09776 Location: 37771-3824 2 bp Feature: domain Description: PAS Location: 38299-38824 bp Feature: domain Description: PAS Location: 38299-38824 bp Feature: domain Description: PRK10060 Location: 38836-40480 bp Feature: domain Description: PRK10060 Location: 38836-4 04 80 bp Feature: gene Location: 40637-42490 bp Ori: CRQ42986.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 40649-42488 bp Feature: domain Description: PRK05658 Location: 4 064 9-4 24 88 bp Feature: gene Location: 58746-60038 bp Ori: CRQ43356.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 58836-60030 bp Feature: domain Description: PRK10770 Location: 58836-60030 bp Feature: gene Location: 60019-62790 bp Ori: CRQ43381.1 Gene: lptD Feature: domain Description: LptD Location: 60214-62776 bp Feature: domain Description: LptD Location: 60214 -62776 bp Feature: gene Location: 62923-64233 bp Ori: CRQ43409.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62926-63502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62926-63502 bp Feature: domain Description: YkfC Location: 63712-63865 bp Feature: domain Description: YkfC Location: 63712-63865 bp Feature: domain Description: HNH Note: nucleases Location: 64039-64177 bp Feature: domain Description: HNH Note: nucleases Location: 64 039-64 177 bp Feature: gene Location: 65477-65611 bp Feature: gene Location: 65908-66924 bp Ori: CRQ43447.1 Feature: domain Description: COG3178 Location: 65911-66910 bp Feature: domain Description: COG3178 Location: 65911-66910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )